Pairwise Alignments

Query, 109 a.a., Hemimethylated DNA-binding region (NCBI) from Rhodospirillum rubrum S1H

Subject, 105 a.a., DNA-binding protein, hemimethylated (RefSeq) from Escherichia coli BW25113

 Score = 50.8 bits (120), Expect = 5e-12
 Identities = 32/94 (34%), Positives = 55/94 (58%), Gaps = 8/94 (8%)

Query: 3  MRVAKYRIGQVVRHRVYPFRGVIFDVDPVFNNTEEWYD--AIPEDIRPARDQPFYHLLAE 60
          M  +K+ IGQ VRH +  + GV+ D+DPV++ +E   D  A+ +++R A   P+YH++ E
Sbjct: 1  MIASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVNDELRAA---PWYHVVME 57

Query: 61 --NGESTYTAYVSEQNLLAEDNPRPVQHPELAEM 92
            NG   +T Y++E  L +E      + P + E+
Sbjct: 58 DDNGLPVHT-YLAEAQLSSELQDEHPEQPSMDEL 90