Pairwise Alignments

Query, 325 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

Subject, 290 a.a., putative Opine ABC transporter, permease protein from Pseudomonas putida KT2440

 Score =  237 bits (604), Expect = 3e-67
 Identities = 123/291 (42%), Positives = 179/291 (61%), Gaps = 10/291 (3%)

Query: 34  AALALKPPHPLAEFWHYFSENKGAVAGLIFIVVIVIVALFAPQVAPHHPYEMNVPMAKMP 93
           A L  KP       W    +N+ +  G+  +V+IV+VALFAP +AP+ P + N+     P
Sbjct: 6   APLVSKP----TTLWQALFQNRLSWIGIGLLVMIVLVALFAPLIAPYDPLQQNIAYRLEP 61

Query: 94  PAWLEGGQWSYLLGTDALGRDILSRIIFGARLSLMVGAVVVTLSLVAGVGLGLLAGFLRG 153
           P+        + LGTD  GRD+LSR+I+G R+SL+VG V V +++V G  LG++AG++ G
Sbjct: 62  PSA------EFWLGTDTYGRDVLSRLIYGTRVSLLVGFVAVMIAMVVGSALGVIAGYVGG 115

Query: 154 WVDIVIMRLMDIILSVPSLLLAIAIVAILGPGLENAMAAIAVVVLPHYTRLTRAAVMTEA 213
             D +I   +D++LS P+LLL + + A+LG  LEN + AIA+  +  + R+ RA  +   
Sbjct: 116 ITDRLITGFVDVLLSFPTLLLGLMVAAMLGASLENLIIAIAITEIAPFVRIARAPTIALK 175

Query: 214 TKDYVTASRVAGASKGRLMVKTILPNTLAPLIVQATLGFSTAILDAAALGFLGLGARPPR 273
            +D+V A R  G   GRLM   ILPN ++ ++V   L  +TAI   A+L F+GLG  PP 
Sbjct: 176 QRDFVEAGRSLGYGPGRLMTVHILPNMISEVLVLGALWMATAIRTEASLSFIGLGVPPPA 235

Query: 274 PEWGTMLSEAREFVLSHWWIVTFPGLAILFTVLAFNLMGDGLRDALDPRMK 324
           P WG+M+ E  E +L  WW+  FP LAIL TVLA +L+GD LRDA DP+ +
Sbjct: 236 PTWGSMIREGFENILDAWWLTVFPSLAILLTVLALSLLGDALRDANDPKTR 286