Pairwise Alignments

Query, 325 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

Subject, 298 a.a., D,D-dipeptide ABC transporter permease from Escherichia coli ECRC62

 Score =  238 bits (608), Expect = 1e-67
 Identities = 122/265 (46%), Positives = 173/265 (65%), Gaps = 6/265 (2%)

Query: 58  VAGLIFIVVIVIVALFAPQVAPHHPYEMNVPMAKMPPAWLEGGQWSYLLGTDALGRDILS 117
           V G + IV+++++ +F+P +A H P  +++    +PP+      W    GTD +GRD+ S
Sbjct: 34  VTGAVIIVLMLLMMIFSPWLATHDPNAIDLTARLLPPS---AAHW---FGTDEVGRDLFS 87

Query: 118 RIIFGARLSLMVGAVVVTLSLVAGVGLGLLAGFLRGWVDIVIMRLMDIILSVPSLLLAIA 177
           R++ G++ S++ G VVV ++ + G  LG L+G L G  D +IMR+MDI+LS+PSL+L +A
Sbjct: 88  RVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSLVLTMA 147

Query: 178 IVAILGPGLENAMAAIAVVVLPHYTRLTRAAVMTEATKDYVTASRVAGASKGRLMVKTIL 237
           + A LGP L NAM AIA+V +P Y RL R   +      YV A++  GAS+  L+   IL
Sbjct: 148 LAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLINWHIL 207

Query: 238 PNTLAPLIVQATLGFSTAILDAAALGFLGLGARPPRPEWGTMLSEAREFVLSHWWIVTFP 297
            N+L PLIVQA+L   +AIL AA LGF+GLGA+ P  EWG M++  R +VL  WW   FP
Sbjct: 208 RNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLDQWWYCAFP 267

Query: 298 GLAILFTVLAFNLMGDGLRDALDPR 322
           G AIL T + FNL GDG+RD LDP+
Sbjct: 268 GAAILLTAVGFNLFGDGIRDLLDPK 292