Pairwise Alignments

Query, 349 a.a., Periplasmic binding protein/LacI transcriptional regulator (NCBI) from Rhodospirillum rubrum S1H

Subject, 340 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 73.2 bits (178), Expect = 9e-18
 Identities = 89/333 (26%), Positives = 140/333 (42%), Gaps = 60/333 (18%)

Query: 34  GFSAKDVGKSYSIATVVKVDGIAWFDRMRE----GAKQFGADTGHDTWMVGPSQADAAAQ 89
           G S     +S+ I       G  W  +M E     AK +G        +V     D   Q
Sbjct: 16  GTSVHAQEQSFKIGLSNSFVGSEWRTQMIEEAQAAAKAWGEKGVKVEVVVQSGNVDVQGQ 75

Query: 90  VQLVENLIAQGVDAICVVPFSVEALEPVLKKARDRGIVVIAHEASNITNADFVLEAFDNL 149
           +  + N + QGVDAI + P S  A +P+  +A+ R I+VIA +A  +++ D +    D  
Sbjct: 76  IGHIRNFMNQGVDAILINPGSPTAFDPIFAQAKARNILVIATDA-EVSSKDALYVGIDQK 134

Query: 150 AYGAKLMEVLGTYMKGEGKYVTTVGSLTSKSQNEWIDGAIAYQKAHFPKMEQATGRLETY 209
           A+ A+  + L   +KG+G  V  +  +     NE     +A  +  F K       ++  
Sbjct: 135 AWAAQSAQWLADALKGKGS-VVAINGIAGNPANE---ARVAGYREVFKKYPD----IKVL 186

Query: 210 DDANTDYNK------LKEVLTTYPDIKGILGGPMPTSAGAGRLISERG-LKDKLFFAGTG 262
           ++AN  +++      ++ +L TYPDI G+       + GA R I   G  KD    A TG
Sbjct: 187 NEANASWDQAQGQQAMQNLLATYPDISGVWVQD-GMADGAWRAIEAAGKTKD---IAATG 242

Query: 263 LVSVAGEYLSKGDIQYIQFW----DPAVAAYAMNIVAVMALDGK---------------- 302
              +  +++++ + +          P V A A+N VAV+ L GK                
Sbjct: 243 --EIRKDFMTRWEKEKFNSGASVNPPGVMASALN-VAVLKLQGKEFKDGIFGGTYGNAVY 299

Query: 303 -----------ADQIKAGLNLGLPGYTSLTAPV 324
                      AD IKA    G PGY S+TA V
Sbjct: 300 IPIPFVSSDNLADNIKAA--DGKPGYWSVTATV 330