Pairwise Alignments

Query, 349 a.a., Periplasmic binding protein/LacI transcriptional regulator (NCBI) from Rhodospirillum rubrum S1H

Subject, 336 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  107 bits (268), Expect = 3e-28
 Identities = 87/303 (28%), Positives = 145/303 (47%), Gaps = 24/303 (7%)

Query: 20  LAADAPVDVSQVPKGFSAKDVGKSYSIATVVKVDGIAWFDRMREGAKQFGADTGH-DTWM 78
           LA  A + V+ +     A DV     IA VVK  G  +F+   +GA++   D G  +   
Sbjct: 12  LALSAALSVAGLGSIAEAADV----KIALVVKSLGNGFFEAANKGAQEAAKDLGGVEIIY 67

Query: 79  VGPSQADAAAQVQLVENLIAQGVDAICVVPFSVEALEPVLKKARDRGIVVIAHEASNITN 138
            GP+   A  Q++++ +LIAQGVDAI +     +A+ P LKKA  RGI VI+ ++     
Sbjct: 68  TGPTSTTAEGQIEVINSLIAQGVDAIAISANDPDAVVPALKKAAQRGIKVISWDSGVAPE 127

Query: 139 ADFV-LEAFDNLAYGAKLMEVLGTYMK-GEGKYVTTVGSLTSKSQNEWIDGAIAYQKAHF 196
              + L    N   G   +++   +++ G+G +     + TS +QN WI G +  Q   F
Sbjct: 128 GRILQLNPSSNALIGKMCLQLAAAHLEGGKGDFAILSATTTSTNQNVWI-GEMKKQLKDF 186

Query: 197 PKMEQATGRLETYDD--ANTDYNKLKEVLTTYPDIKGILGGPMPTSAG---AGRLISERG 251
           P +   T     Y D  A+  Y + + +L++ P++K I+    PT+ G   A + + + G
Sbjct: 187 PGLNLVT---TVYGDDLADKSYREAQGLLSSQPNVKVIVA---PTTVGVLAASQAVKDAG 240

Query: 252 LKDKLFFAGTGLVSVAGEYLSKGDIQYIQFWDPAVAAYAMNIVAVMALDGKAD-----QI 306
              ++F  G GL S     +  G  +    W+P    Y+   +A   + G+AD     +I
Sbjct: 241 KIGQVFVTGLGLPSEMAGAIKSGATKEFAIWNPIDLGYSATQIAYRLVKGEADGKPGSEI 300

Query: 307 KAG 309
           +AG
Sbjct: 301 EAG 303