Pairwise Alignments

Query, 239 a.a., Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) from Rhodospirillum rubrum S1H

Subject, 229 a.a., Octopine transport system permease protein OccM from Azospirillum sp. SherDot2

 Score =  226 bits (577), Expect = 2e-64
 Identities = 114/227 (50%), Positives = 167/227 (73%), Gaps = 2/227 (0%)

Query: 1   MNLDLVATFLPKLLFEGLPVTLKLVTLAVAIGVFIAIPTALLRVHPSPLVRAFPYAFIFF 60
           MN  L+   LP++L  GL +TL+L+  ++A+G  +A   ALLR+  + +V     A++F 
Sbjct: 1   MNWQLMWDSLPRML-GGLTLTLELIVGSLALGALVAFGVALLRLSGNRVVETLAAAYVFV 59

Query: 61  FRGTPLLIQIALVYYGLSTLPWIRENEVLWPILREPFWCALIAFALNTGAYSAEILRGAI 120
           FRGTPLL+QI LVYYGL    +IR++ +LWP LREP+WCA++A  LNTGAY++E+LRGAI
Sbjct: 60  FRGTPLLVQIFLVYYGLGQFEFIRDS-ILWPFLREPYWCAILALTLNTGAYTSEVLRGAI 118

Query: 121 QAIPRGEVEAARAYGMRGLLIVRRIILPRAFQIGLPAYGNEIILILKGSALASSITLLDI 180
            ++P+G+VEAARA GM   L  RRI+LP A +  LPAYGNE+IL++K ++LAS+ITL+++
Sbjct: 119 LSVPQGQVEAARACGMSRALAFRRIVLPVAIRQMLPAYGNEVILMVKATSLASTITLMEV 178

Query: 181 TGVARLLYARYYTPVEAFVTAGVIYLILVYLLTRGLRLIERRLSRHL 227
           TG+AR + A+ +   E F+ AGVIYL+L ++ TR ++  E RL+ +L
Sbjct: 179 TGIARRMIAQTFAVFELFIVAGVIYLVLNFIATRLIKFAEWRLTPYL 225