Pairwise Alignments

Query, 232 a.a., Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) from Rhodospirillum rubrum S1H

Subject, 239 a.a., L-lysine and D-lysine ABC transporter, permease component 1 (from data) from Pseudomonas putida KT2440

 Score =  152 bits (385), Expect = 4e-42
 Identities = 84/225 (37%), Positives = 130/225 (57%), Gaps = 1/225 (0%)

Query: 5   GYGDLLITGAAMTIKLVLGAVSFGLVLGLIGTTLKLSRNALARAVGNAYTDLFRGLPELL 64
           G+G  L+ GA +T+ L L  +  GL LGL+      SR  L RA    ++ +FRGLPELL
Sbjct: 14  GWGQALLAGALVTVSLALACLPIGLPLGLVVALAARSRKRLPRAWATTFSTVFRGLPELL 73

Query: 65  VVLIMYYGAEALVRWLVNDVLALDVAVSISPYVGGVLSLGLIFGAYASEVFRGAILAIPR 124
            +LI+YYG +   + ++   +       I+ ++  +++  L+F A++SE++  A   +P+
Sbjct: 74  TLLIIYYGCQIAAQKILA-AMGYQGEFLINTFLAAMIAFSLVFAAFSSEIWLAAFKTLPK 132

Query: 125 GHVEAARAFGMGPVLTYRRIILPQVWRVALPGLGNLFLVSLKDTALVSAIGLNELMRSAN 184
           G +EA  A G+     + +++LPQ+ R+ALPGL N +L  LKDT+LVS I L +LMR  N
Sbjct: 133 GQLEACSALGLSKRTGFFKVLLPQLTRIALPGLSNNWLSLLKDTSLVSTISLVDLMRQTN 192

Query: 185 IAGRSTRDYFTFLLAAAFLYLAMTMVSMAVIALLERRANRGHVGA 229
           +A   T++   F   A   YL    +S  V A +ERR+NR   GA
Sbjct: 193 LAVSVTKEPMFFYGVACLGYLLFAALSGRVFAYIERRSNRHLQGA 237