Pairwise Alignments

Query, 639 a.a., Excinuclease ABC, C subunit (NCBI) from Rhodospirillum rubrum S1H

Subject, 585 a.a., UvrABC system protein C from Pseudomonas sp. RS175

 Score =  439 bits (1130), Expect = e-127
 Identities = 255/597 (42%), Positives = 353/597 (59%), Gaps = 19/597 (3%)

Query: 49  MIDGKGDVLYVGKARNLKRRVINYTQPHRLPVRIQRMIAATLTMEVLTTHTEAEALLLES 108
           M D    +LYVGKA+NLK+R+ +Y +   L  +   ++     +E   T  E EALLLE 
Sbjct: 1   MFDSDARLLYVGKAKNLKKRLASYFRKTGLAPKTSALVGRIAQIETTITANETEALLLEQ 60

Query: 109 NLIKKLKPRYNILLRDDKSFPYIEITSDHAFPRIVKFRGTLRKGGEYFGPFASAGAVTST 168
            LIK+ +P YNILLRDDKS+PY+ + SD AFPR+   RG  +  G YFGP+ SA A+  +
Sbjct: 61  TLIKEWRPPYNILLRDDKSYPYVFL-SDGAFPRLSIHRGAKKAKGRYFGPYPSAAAIRES 119

Query: 169 LTALQKTFLLRTCADNVFASRSRPCLLFQIKRCAAPCVDRVAEADYKALVEEARAFLSGS 228
           L+ LQKTF +R C D+ + +R+RPCL +QIKRC APCV  V    Y   V  +  FL G 
Sbjct: 120 LSLLQKTFFVRQCEDSYYKNRTRPCLQYQIKRCKAPCVGLVEPQVYAEDVRHSVMFLEGR 179

Query: 229 SKALQHDLAKRMDEAAQALDYEQAAIFRDRIKALTNVQSHQDINLPTLGEADVIACHQAG 288
           S AL  +L+  M+EAA  L++E+AA  RD+I  L  VQ  Q +   + G+ DVIA     
Sbjct: 180 SNALTDELSAAMEEAAINLEFEKAAELRDQIGLLRRVQDQQSMEGGS-GDVDVIAAFINP 238

Query: 289 GQTCVQVFFFRGGRNNGNRSFFPAHAGDEGLPEVLEAFLGQFYAGFPP---PREILLLTD 345
           G  CV +   RGGR  G+++FFP    +E + EV+ AFLGQ+Y   P    P E  L+ +
Sbjct: 239 GGACVHLISVRGGRVLGSKNFFPQVGIEEDVAEVMSAFLGQYYVSSPERDLPSE--LIVN 296

Query: 346 IPHHD---LVEQALCLRAGHRVRLVVPRRGSRRKLIDHALANAREALGRRLAESSAQRTL 402
           + H D   LVE    LR G  + +    RG+R +    A+ NA +ALG RLA        
Sbjct: 297 VVHEDFPALVEAIHTLR-GRELTISHRVRGTRARWQQLAVTNAEQALGARLANRQHVAAR 355

Query: 403 LEGTAVAFGLDGPLQRVEIYDNSHISGTHAVGGMVVAGPEGFMKAAYRKFNIRSPDITPG 462
            +  A    LD P QR+E YD SH SG   V   VV GPEG +K+ YR++NI    +TPG
Sbjct: 356 FDALAEVLNLDEPPQRLECYDISHSSGEATVASCVVFGPEGPIKSDYRRYNIEG--VTPG 413

Query: 463 DDYAMMREVMIRRFARARKEDPDRDRGQWPDLVLIDGGLGQLNAVREALAEIGVEDVPLV 522
           DDYA M + ++RRF + +  +     G+ PD++L+DGG GQL+  R+ L E+ V D+ L+
Sbjct: 414 DDYAAMHQALMRRFGKLKDGE-----GKLPDILLVDGGKGQLSMARDVLNELMVPDLILL 468

Query: 523 GVAKGPDRDAGRERFFV-PGRPPFMLRHNDPVLYFIQRLRDEAHRFAIGSHRTRRSKAIG 581
           GVAKG  R AG E  ++      F L+ + P L+ IQ++RDEAHRFAI  HR RR K   
Sbjct: 469 GVAKGATRKAGFETLYLNDAAHEFTLKGDSPALHLIQQIRDEAHRFAITGHRARRGKTRR 528

Query: 582 VSPLDSVPGIGASRKKALLHHFGSAKAVSQAGLTDLEAVEGISAALAKKLYDHFHSE 638
            S L+ V G+G +R++ LL HFG  + +S+A + ++    GIS  LA+ +Y + HSE
Sbjct: 529 TSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIEEIAKAPGISKKLAESIYANLHSE 585