Pairwise Alignments

Query, 639 a.a., Excinuclease ABC, C subunit (NCBI) from Rhodospirillum rubrum S1H

Subject, 607 a.a., excinuclease ABC subunit UvrC from Pseudomonas fluorescens SBW25

 Score =  460 bits (1184), Expect = e-134
 Identities = 265/611 (43%), Positives = 365/611 (59%), Gaps = 19/611 (3%)

Query: 35  AALRTMPSSPGVYRMIDGKGDVLYVGKARNLKRRVINYTQPHRLPVRIQRMIAATLTMEV 94
           A L T    PGVYRM D +  +LYVGKA+NLK R+ +Y +   L  +   ++A    +E 
Sbjct: 9   AFLSTCSGRPGVYRMFDSEARLLYVGKAKNLKNRLASYFRKSGLAPKTAALVARIAQVET 68

Query: 95  LTTHTEAEALLLESNLIKKLKPRYNILLRDDKSFPYIEITSDHAFPRIVKFRGTLRKGGE 154
             T  E EALLLE  LIK+ +P YNILLRDDKS+PY+ + SD  FPR+   RG  ++ G+
Sbjct: 69  TITANETEALLLEQTLIKEWRPPYNILLRDDKSYPYVFL-SDGNFPRLSIHRGAKKQKGK 127

Query: 155 YFGPFASAGAVTSTLTALQKTFLLRTCADNVFASRSRPCLLFQIKRCAAPCVDRVAEADY 214
           YFGP+ SAGA+  +L+ LQKTF +R C D+ + +R+RPCL +QIKRC APCV  V  A+Y
Sbjct: 128 YFGPYPSAGAIRESLSLLQKTFFVRQCEDSFYKNRTRPCLQYQIKRCKAPCVGLVDPAEY 187

Query: 215 KALVEEARAFLSGSSKALQHDLAKRMDEAAQALDYEQAAIFRDRIKALTNVQSHQDINLP 274
              V  +  FL G S AL  +L+  M++AA  LD+E+AA  RD+I  L  VQ  Q +   
Sbjct: 188 AEDVRHSVMFLEGRSNALTDELSGAMEQAASTLDFERAAELRDQISLLRRVQDQQSMEGG 247

Query: 275 TLGEADVIACHQAGGQTCVQVFFFRGGRNNGNRSFFPAHAGDEGLPEVLEAFLGQFYAGF 334
           T G+ DVIA     G  CV +   RGGR  G+++FFP    DE + EV+ AFLGQ+Y   
Sbjct: 248 T-GDVDVIAAFVNPGGACVHLISVRGGRVLGSKNFFPQTGIDEEVAEVMAAFLGQYYVSS 306

Query: 335 PP---PREILLLTDIPHHD---LVEQALCLRAGHRVRLVVPRRGSRRKLIDHALANAREA 388
           P    P E  L+ ++ H D   L+E    LR G  + +    RG+R +    A+ NA +A
Sbjct: 307 PERDLPSE--LIVNVVHEDFPTLIEAIHELR-GRELDISHRVRGTRARWQQLAVTNAEQA 363

Query: 389 LGRRLAESSAQRTLLEGTAVAFGLDGPLQRVEIYDNSHISGTHAVGGMVVAGPEGFMKAA 448
           LG RLA         +  A    LD P QR+E YD SH SG   V   VV GPEG +K+ 
Sbjct: 364 LGARLANRQHVAARFDALAEVLNLDEPPQRLECYDISHSSGEATVASCVVFGPEGPIKSD 423

Query: 449 YRKFNIRSPDITPGDDYAMMREVMIRRFARARKEDPDRDRGQWPDLVLIDGGLGQLNAVR 508
           YR++NI    +T GDDYA M + + RRF++ +  +     G+ PD++L+DGG GQL+  R
Sbjct: 424 YRRYNIEG--VTAGDDYAAMHQALTRRFSKLKDGE-----GKLPDILLVDGGKGQLSMAR 476

Query: 509 EALAEIGVEDVPLVGVAKGPDRDAGRERFFV-PGRPPFMLRHNDPVLYFIQRLRDEAHRF 567
           + L E+ V D+ L+GVAKG  R AG E  ++      F L+ + P L+ IQ++RDEAHRF
Sbjct: 477 DVLNELAVPDLILLGVAKGATRKAGFETLYLNDSAHEFTLKGDSPALHLIQQIRDEAHRF 536

Query: 568 AIGSHRTRRSKAIGVSPLDSVPGIGASRKKALLHHFGSAKAVSQAGLTDLEAVEGISAAL 627
           AI  HR RR K    S L+ V G+G +R++ LL HFG  + +S+A + ++    GIS  L
Sbjct: 537 AITGHRARRGKTRRTSTLEGVAGVGPTRRRDLLKHFGGLQELSRASIDEIAKAPGISKKL 596

Query: 628 AKKLYDHFHSE 638
           A+ +Y + HSE
Sbjct: 597 AELIYANLHSE 607