Pairwise Alignments

Query, 639 a.a., Excinuclease ABC, C subunit (NCBI) from Rhodospirillum rubrum S1H

Subject, 610 a.a., excinuclease ABC subunit UvrC from Pectobacterium carotovorum WPP14

 Score =  407 bits (1045), Expect = e-118
 Identities = 246/608 (40%), Positives = 352/608 (57%), Gaps = 21/608 (3%)

Query: 35  AALRTMPSSPGVYRMIDGKGDVLYVGKARNLKRRVINYTQPHRLPVRIQRMIAATLTMEV 94
           A L+T+ S PGVYRM D    V+YVGKA++LK+R+ +Y + H    + + ++ +   ++V
Sbjct: 9   AFLKTVTSQPGVYRMYDAGNTVIYVGKAKDLKKRLASYFRSHVASRKTEALVKSIKHIDV 68

Query: 95  LTTHTEAEALLLESNLIKKLKPRYNILLRDDKSFPYIEITSDHAFPRIVKFRGTLRKGGE 154
             THTE EALLLE N IK  +PRYN+LLRDDKS+P I ++ D A PR+   RG     GE
Sbjct: 69  TITHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPMIFLSGD-AHPRLAVHRGAKHAKGE 127

Query: 155 YFGPFASAGAVTSTLTALQKTFLLRTCADNVFASRSRPCLLFQIKRCAAPCVD-RVAEAD 213
           YFGPF +  AV  TL  LQK F +R C ++V+ +RSRPCL +QI RC  PCV   V+E D
Sbjct: 128 YFGPFPNGNAVRETLILLQKLFPVRQCENSVYRNRSRPCLQYQIGRCLGPCVSGLVSEED 187

Query: 214 YKALVEEARAFLSGSSKALQHDLAKRMDEAAQALDYEQAAIFRDRIKALTNVQSHQDINL 273
           Y+  V+  R FLSG  + + + L  RM+ A++ L +E AA  RD+I+A+  V   Q ++ 
Sbjct: 188 YQQQVDYVRLFLSGKDQQVLNQLISRMEAASRDLHFEDAARIRDQIQAVRRVTEKQFVS- 246

Query: 274 PTLGEADVIACHQAGGQTCVQVFFFRGGRNNGNRSFFPAHAGDEGLPEVLEAFLGQFY-- 331
               + DVI+     G  CV V F R G+  G+RS+FP   G   L EV++ F+GQFY  
Sbjct: 247 GDGEDLDVISVAFDAGMACVYVLFIRQGKVLGSRSYFPKVPGGTELGEVVQTFVGQFYLQ 306

Query: 332 --AGFPPPREILLLTDIPHHDLVEQALCLRAGHRVRLVVPRRGSRRKLIDHALANAREAL 389
              G   P EILL   +P  DL+ ++L   AG +V++    RG R + +  A  NA  AL
Sbjct: 307 GSLGRTLPTEILLDFTLPDKDLLTESLTAVAGRKVQIQTKPRGDRARYLKLARTNAATAL 366

Query: 390 GRRLAESSAQRTLLEGTAVAFGLDGPLQRVEIYDNSHISGTHAVGGMVVAGPEGFMKAAY 449
             +L++ S     L   A    L   + R+E +D SH  G   V   VV    G +++ Y
Sbjct: 367 VTKLSQQSTIHQRLAALANVLQLP-EIHRMECFDISHTMGEQTVASCVVFDANGPLRSEY 425

Query: 450 RKFNIRSPDITPGDDYAMMREVMIRRFARARKEDPDRDRGQWPDLVLIDGG---LGQLNA 506
           R++NI    ITPGDDYA M +V+ RR+ +A       D  + PD+++IDGG   LGQ  A
Sbjct: 426 RRYNISG--ITPGDDYAAMAQVLRRRYGKA------LDDSKIPDVIVIDGGKGQLGQAQA 477

Query: 507 VREALAEIGVEDVP-LVGVAKGPDRDAGRERFFVPGRPPFM-LRHNDPVLYFIQRLRDEA 564
           V ++L     ++ P L+GVAKG DR AG E  F       M L  + P L+ IQ +RD++
Sbjct: 478 VFDSLQVSWDKNKPLLLGVAKGSDRKAGLETLFFESTGEGMALPPDSPALHVIQHIRDDS 537

Query: 565 HRFAIGSHRTRRSKAIGVSPLDSVPGIGASRKKALLHHFGSAKAVSQAGLTDLEAVEGIS 624
           H  AIG HR +R+K    S L+ + G+G  R++ LL + G  + +  A + ++  V GIS
Sbjct: 538 HDHAIGGHRKKRAKVRNTSTLELIEGVGPKRRQTLLKYMGGLQPLMNASIEEIANVPGIS 597

Query: 625 AALAKKLY 632
            ALA+K++
Sbjct: 598 HALAEKIF 605