Pairwise Alignments

Query, 639 a.a., Excinuclease ABC, C subunit (NCBI) from Rhodospirillum rubrum S1H

Subject, 610 a.a., excinuclease ABC subunit UvrC from Escherichia coli ECRC98

 Score =  418 bits (1075), Expect = e-121
 Identities = 252/610 (41%), Positives = 357/610 (58%), Gaps = 23/610 (3%)

Query: 34  RAALRTMPSSPGVYRMIDGKGDVLYVGKARNLKRRVINYTQPHRLPVRIQRMIAATLTME 93
           +A L+T+ S PGVYRM D  G V+YVGKA++LK+R+ +Y + +    + + ++A    ++
Sbjct: 8   KAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLSSYFRSNLASRKTEALVAQIQQID 67

Query: 94  VLTTHTEAEALLLESNLIKKLKPRYNILLRDDKSFPYIEITSDHAFPRIVKFRGTLRKGG 153
           V  THTE EALLLE N IK  +PRYN+LLRDDKS+P+I ++ D   PR+   RG     G
Sbjct: 68  VTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSYPFIFLSGD-THPRLAMHRGAKHAKG 126

Query: 154 EYFGPFASAGAVTSTLTALQKTFLLRTCADNVFASRSRPCLLFQIKRCAAPCVD-RVAEA 212
           EYFGPF +  AV  TL  LQK F +R C ++V+ +RSRPCL +QI RC  PCV+  V+E 
Sbjct: 127 EYFGPFPNGYAVRETLALLQKIFPIRQCENSVYRNRSRPCLQYQIGRCLGPCVEGLVSEE 186

Query: 213 DYKALVEEARAFLSGSSKALQHDLAKRMDEAAQALDYEQAAIFRDRIKALTNVQSHQDIN 272
           +Y   VE  R FLSG    +   L  RM+ A+Q L++E+AA  RD+I+A+  V   Q ++
Sbjct: 187 EYAQQVEYVRLFLSGKDDQVLTQLISRMETASQNLEFEEAARIRDQIQAVRRVTEKQFVS 246

Query: 273 LPTLGEADVIACHQAGGQTCVQVFFFRGGRNNGNRSFFPAHAGDEGLPEVLEAFLGQFYA 332
             T  + DVI      G  CV V F R G+  G+RS+FP   G   L EV+E F+GQFY 
Sbjct: 247 -NTGDDLDVIGVAFDAGMACVHVLFIRQGKVLGSRSYFPKVPGGTELSEVVETFVGQFYL 305

Query: 333 GFPP----PREILLLTDIPHHDLVEQALCLRAGHRVRLVVPRRGSRRKLIDHALANAREA 388
                   P EILL  ++    L+  +L   AG ++ +    RG R + +  A  NA  A
Sbjct: 306 QGSQMRTLPGEILLDFNLSDKTLLADSLSELAGRKINVQTKPRGDRARYLKLARTNAATA 365

Query: 389 LGRRLAESSAQRTLLEGTAVAFGLDGP-LQRVEIYDNSHISGTHAVGGMVVAGPEGFMKA 447
           L  +L++ S     L  TA+A  L  P ++R+E +D SH  G   V   VV    G ++A
Sbjct: 366 LTSKLSQQSTVHQRL--TALASVLKLPEVKRMECFDISHTMGEQTVASCVVFDANGPLRA 423

Query: 448 AYRKFNIRSPDITPGDDYAMMREVMIRRFARARKEDPDRDRGQWPDLVLIDGGLGQLNAV 507
            YR++NI    ITPGDDYA M +V+ RR+ +A       D  + PD++LIDGG GQL   
Sbjct: 424 EYRRYNITG--ITPGDDYAAMNQVLRRRYGKA------IDDSKIPDVILIDGGKGQLAQA 475

Query: 508 REALAEIGV---EDVP-LVGVAKGPDRDAGRER-FFVPGRPPFMLRHNDPVLYFIQRLRD 562
           +   AE+ V   ++ P L+GVAKG DR AG E  FF P    F L  + P L+ IQ +RD
Sbjct: 476 KNVFAELDVSWDKNHPLLLGVAKGADRKAGLETLFFEPEGEGFSLPPDSPALHVIQHIRD 535

Query: 563 EAHRFAIGSHRTRRSKAIGVSPLDSVPGIGASRKKALLHHFGSAKAVSQAGLTDLEAVEG 622
           E+H  AIG HR +R+K    S L+++ G+G  R++ LL + G  + +  A + ++  V G
Sbjct: 536 ESHDHAIGGHRKKRAKVKNTSSLETIEGVGPKRRQMLLKYMGGLQGLRNASVEEIAKVPG 595

Query: 623 ISAALAKKLY 632
           IS  LA+K++
Sbjct: 596 ISQGLAEKIF 605