Pairwise Alignments

Query, 605 a.a., AMP-dependent synthetase and ligase (NCBI) from Rhodospirillum rubrum S1H

Subject, 567 a.a., long-chain fatty acid--CoA ligase from Pseudomonas simiae WCS417

 Score =  148 bits (374), Expect = 5e-40
 Identities = 159/586 (27%), Positives = 256/586 (43%), Gaps = 103/586 (17%)

Query: 16  NLLAMFLAQAERFGER-PFLWSKSEGGYAPWSWASVHDQVIALANAMIDQGLAPGDRVVL 74
           +L  +FL   E+F ER  ++   +E  YA W       Q +A A  +  QG+  G+RV L
Sbjct: 34  SLREVFLEHLEKFRERVAYVSIGTEMTYADWQV-----QGVAFAAWLQGQGVRKGERVAL 88

Query: 75  ASENRPDWTIADLAILAAGAIPV---PAYATHTEADHLHVLDNVEAAMAIVSTPLVAERF 131
              N   + I  L  + AGA+ V   P Y +H E  HL      E  +   +     E+ 
Sbjct: 89  MMPNCLQYPICLLGTILAGAVVVNVNPLYTSH-ELKHLLKDSGAETVVIFENFAHTLEKV 147

Query: 132 LRAAARAKRRPLVVMMD----FDDAVV----------VPAGLTVLAWNAMMAEGEGRGVP 177
           +  ++  KR  +  + D    F  A +          VPA     +        +GR + 
Sbjct: 148 ITGSS-VKRVVIAAIGDLLGTFKGAAMNFILRRVQKQVPAFNLPGSVRFNQVLKQGRALN 206

Query: 178 AVVHRIQTDDLASIIHTSGTGGTPKGVMLAHRSILHNCHGAFKLL--ETIGLEEEVFLSF 235
                +  D LA + +T GT G  KGVML+HR+I+ N   A   +  +    ++E  ++ 
Sbjct: 207 HFPVEMHLDALAFLQYTGGTTGDAKGVMLSHRNIIANLLQAKAWVGDQLDQDKQETNVTL 266

Query: 236 LPLCHSYEHTTGLFFPISLGAQVYFAEGAETLAANMVEAKPTIMTAVPRLYEMMRARILR 295
           LPL H +  T      + LG +                    I+ A PR  ++ R +++ 
Sbjct: 267 LPLYHIFSLTVNCLMFMCLGGR-------------------NILIANPR--DVKRVQMIL 305

Query: 296 AVEKEGGLKEKMFREAVDLGRRRMDDPASLGVKDKLTDAALDKLVRHAVKARFGGRLKAM 355
             E+  G+                      GV           L   A  AR    L+ +
Sbjct: 306 RKERFNGIA---------------------GVNTLFNGL----LENEAFCARDFSDLRMV 340

Query: 356 ISGGGPLNPDVGYFFRAL-GIPVLQGYGLTETAPVVSCNMPKKVKMN------TVGPALY 408
           I+GG   +  V   ++ + G+P+++GYGLTE +PVVS +     +M       ++G  L 
Sbjct: 341 IAGGMATHTAVAKRWKEVTGLPIIEGYGLTECSPVVSISPIDIARMREMEFTGSIGVPLP 400

Query: 409 GVDIR----------IASDGEILVKGPLVMDGYWNDPESTRAVLDPDGWLHTGDVGTLDE 458
              +R          I   GE+ V+GP VM GYW  PE+T  VLD +GWL TGD+G +D 
Sbjct: 401 STWVRFVREDGELAEIGEQGELQVRGPQVMQGYWQRPEATAEVLDAEGWLSTGDIGVMDA 460

Query: 459 DGFIQITDRKKDLIVNSGGHNISPQRVEGILGLEPEI----GVGV---VFGDRMPHLVAL 511
            G+I++ DRKKD+I+ S G N+ P  +E ++ L P +     +GV   V G+++  +V  
Sbjct: 461 RGYIRLVDRKKDMILVS-GFNVYPNEIEDVVALHPAVAEVAAIGVEDGVTGEKVKIIVVR 519

Query: 512 IVP---EKEFLARWSKE-TGKPADLALVYEDADL-RQAIGKAVERA 552
             P   +++ LA   +  TG      + +   +L +  +GK + RA
Sbjct: 520 KDPNLTQEQILAHCREYLTGYKMPKYVEFRTTELPKTTVGKVLRRA 565