Pairwise Alignments

Query, 605 a.a., AMP-dependent synthetase and ligase (NCBI) from Rhodospirillum rubrum S1H

Subject, 562 a.a., long-chain-fatty-acid/CoA ligase from Pseudomonas putida KT2440

 Score =  135 bits (339), Expect = 6e-36
 Identities = 146/550 (26%), Positives = 221/550 (40%), Gaps = 94/550 (17%)

Query: 9   VNYETCGNLLAMFLAQAERFGERPFLWSKSEGGYAPWSWASVHDQVIALANAMIDQ--GL 66
           ++     +++ +F    +RF +RP   +         S+A +     A A A + Q   L
Sbjct: 18  IDINAYASVVEVFERSCKRFADRPAFSNLG----VTLSYAELERHSAAFA-AWLQQHTDL 72

Query: 67  APGDRVVLASENRPDWTIADLAILAAGAIPVPAYATHTEADHLHVLDNVEAAMAIVSTPL 126
            PG+R+ +   N   + IA    + AG I V     +TE +  H   +   A A+V   +
Sbjct: 73  KPGERIAVQMPNVLQYPIAVFGAMRAGLIVVNTNPLYTEREMRHQFKD-SGARALVYLNM 131

Query: 127 VAER-----------FLRAAARAKRRPLVVMMDFDDAV-----VVPAGLTVLAWNAMMAE 170
             +R           +L  A      P       +  V     +VPA     A       
Sbjct: 132 FGKRVQEVLPDTGIEYLIEAKMGDLLPAAKGWLVNTVVDKLKKMVPAYRLPQAVPFKQVL 191

Query: 171 GEGRGVPAVVHRIQTDDLASIIHTSGTGGTPKGVMLAHRSILHNCHGAFKLLETIGLE-- 228
            EGRG+      +  DD+A + +T GT G  KG ML H +++ N           G +  
Sbjct: 192 REGRGLSPKPVSLNLDDIAVLQYTGGTTGLAKGAMLTHGNLVANMLQVLACFSQHGPDGQ 251

Query: 229 ------EEVFLSFLPLCHSYEHTTGLFFPISLGAQVYFAEGAETLAANMVEAKPTIMTAV 282
                 +EV ++ LPL H Y  T                         MV     ++   
Sbjct: 252 KLLKDGQEVMIAPLPLYHIYAFTANCM-------------------CMMVTGNHNVLITN 292

Query: 283 PRLYEMMRARILRAVEKEGGLKEKMFREAVDLGRRRMDDPASLGVKDKLTDAALDKLVRH 342
           PR             +  G +KE        LG+ R    A LG+ + L  A +D     
Sbjct: 293 PR-------------DIPGFIKE--------LGKWRFS--ALLGL-NTLFVALMD---HP 325

Query: 343 AVKARFGGRLKAMISGGGPLNPDVGYFFRAL-GIPVLQGYGLTETAPVVSCN-MPKKVKM 400
             +      LK   SGG  L       +  L G  +++GYGLTET+PV S N   +  ++
Sbjct: 326 GFRQLDFSALKVTNSGGTALVKATAERWEDLTGCRIVEGYGLTETSPVASTNPYGQLARL 385

Query: 401 NTVGPALYGVDIRIASD----------GEILVKGPLVMDGYWNDPESTRAVLDPDGWLHT 450
            TVG  + G   ++  D          GE+ +KGP VM GYW  PE+T   LD +GW  T
Sbjct: 386 GTVGIPVAGTAFKVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAQALDAEGWFKT 445

Query: 451 GDVGTLDEDGFIQITDRKKDLIVNSGGHNISPQRVEGILGLEPEIGVGVVFG---DRMPH 507
           GD+  +D DGF +I DRKKD+I+ S G N+ P  +E ++   P++      G   +R   
Sbjct: 446 GDIAVIDPDGFTRIVDRKKDMIIVS-GFNVYPNEIEDVVMGHPKVANCAAIGVPDERSGE 504

Query: 508 LVALIVPEKE 517
            V L V  +E
Sbjct: 505 AVKLFVVPRE 514