Pairwise Alignments

Query, 324 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

Subject, 337 a.a., Dipeptide transport system permease protein DppB from Xanthobacter sp. DMC5

 Score =  159 bits (401), Expect = 1e-43
 Identities = 105/343 (30%), Positives = 168/343 (48%), Gaps = 31/343 (9%)

Query: 1   MLTALASRFAQMIFVLVGISMIVFLIFFATPGSDPAARIAGRNASQETLQVVRHDFGLDR 60
           ML  L SR A  +  L+G+ ++ FL+    PG D AA  AG  A+ + +  +R   GLD+
Sbjct: 1   MLKLLGSRLATAVPSLIGVVIVTFLLTRVLPG-DTAAYFAGPAATPQAIAEIRTKLGLDK 59

Query: 61  PLPVQYALMMKRLFITGDLTSFVNRGQKVVPTVVNAIPVTLSLVLGAGVLWVVGGVVVGV 120
            LP Q+A  +  L   GDL S ++ GQ V   + + +P +  L L   VL ++  V  G+
Sbjct: 60  SLPAQFADYVSAL-AHGDLGSSLSTGQPVATEIASRLPASAELTLAGLVLALLIAVPFGI 118

Query: 121 LAAMTRGRWLDRVLMILGLIGVSMPVFWLGEVANLVSQSRFHDTFLFSWVPA-------- 172
           +AA+ +G W+D    I+   GVS+PVF+ G +   V        F   W PA        
Sbjct: 119 MAAVRQGSWIDHACRIITTAGVSLPVFFTGLLLVYVFY------FKLGWAPAPLGRLDVF 172

Query: 173 -------LGYKPFSEDPAGWFKT-------LVIPWFTLATLYVGLYGRVLRASLIEVLQE 218
                   G+       A  F+T       L +P  TLA   +    R+ RAS++ VL  
Sbjct: 173 FSAPETVTGFYLIDSLIARDFETFRAALAQLAVPAITLAIFALAPIARMTRASMLAVLSS 232

Query: 219 DFIRTARAKGLSERRILLRHGLRSSLVAFVTMFGLDFGALVGGGALLAEVVFGLQGVGKV 278
           +F+RTA+A GL++  +++ +  R++++  VT  G+ F  L+G   +L E VF   G+G  
Sbjct: 233 EFVRTAKAAGLTDYTVIITYAFRNAMLPVVTTLGMVFSFLLGAN-VLVEKVFAWPGIGSY 291

Query: 279 TYDAMQNLDLPTIMATVIYASFFVVFANFIVDVLYAFLDPRVR 321
             +A+   D   +   V+  +   V  N ++D+ Y  +DPR R
Sbjct: 292 AVEALITSDYAPVQGFVLAMAILYVILNLLIDLAYGIIDPRAR 334