Pairwise Alignments

Query, 324 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

Subject, 311 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  183 bits (465), Expect = 4e-51
 Identities = 107/317 (33%), Positives = 178/317 (56%), Gaps = 10/317 (3%)

Query: 5   LASRFAQMIFVLVGISMIVFLIFFATPGSDPAARIAGRNASQETLQVVRHDFGLDRPLPV 64
           +  RF   + V+  ++++VFL+   +PG DPAA IAG  A+ E ++ +R   GL+ PL  
Sbjct: 4   IVRRFLSTLPVMAVVAVVVFLLIHLSPG-DPAALIAGDLATTEDIEKLRATLGLNLPLWQ 62

Query: 65  QYALMMKRLFITGDLTSFVNRGQKVVPTVVNAIPVTLSLVLGAGVLWVVGGVVVGVLAAM 124
           Q+ L + +LF TGDL + +     V   +   +  T+S+     ++ +V  V +G LAA 
Sbjct: 63  QFTLWLGKLF-TGDLGTSIFTQVPVAQLLGQRLEPTVSIAALTMLITLVVSVPLGTLAAY 121

Query: 125 TRGRWLDRVLMILGLIGVSMPVFWLGEVANLVSQSRFHDTFLFSWVPALGYKPFSEDPAG 184
             G W+DR++M+  ++  S+PVF +G +  LV    +       W P  GY   ++    
Sbjct: 122 RAGSWIDRLVMLFAVLAFSVPVFLVGYL--LV----YSFAIQLPWFPVQGYVRLADGAGE 175

Query: 185 WFKTLVIPWFTLATLYVGLYGRVLRASLIEVLQEDFIRTARAKGLSERRILLRHGLRSSL 244
           W ++LV+P   LA +Y+ L  R+ RA+++EVL ED+IRTARAKGL    + L H LR++ 
Sbjct: 176 WLRSLVLPCVNLALVYIALVTRMTRATVLEVLHEDYIRTARAKGLGVLPV-LGHALRNAA 234

Query: 245 VAFVTMFGLDFGALVGGGALLAEVVFGLQGVGKVTYDAMQNLDLPTIMATVIYASFFVVF 304
           +   T  G     L+ GG ++ E VF + GVG++  D++Q  D P I + ++ ++   V 
Sbjct: 235 IPIATTIGAGIALLI-GGVVVTETVFAIPGVGRLVIDSVQRHDYPVIQSVLLLSAGVYVL 293

Query: 305 ANFIVDVLYAFLDPRVR 321
            N ++D+ Y   DPR++
Sbjct: 294 INLLIDLSYRLFDPRIQ 310