Pairwise Alignments

Query, 511 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

Subject, 465 a.a., sigma-54-dependent Fis family transcriptional regulator from Pseudomonas fluorescens SBW25

 Score =  295 bits (755), Expect = 2e-84
 Identities = 177/458 (38%), Positives = 259/458 (56%), Gaps = 15/458 (3%)

Query: 55  ILLVEDTPVQARTYLDYLDGGPWTIEHVETGAEALAVLERRPPSLMLLDIHLPDMDGMEI 114
           IL+V+D P         L      +     G  AL VLE+    L++ D  +P MDG  +
Sbjct: 5   ILVVDDEPKLCDLLASALGQNNVQVFIAGNGLHALKVLEQEDIDLVISDWRMPGMDGPAL 64

Query: 115 LRRVRSLPLSMGVVMITSNASISLAVAAMQAGANDFLVKPFSRDRLMVTLRNVIDNQRLS 174
           L  ++     + V+++T+ +++  AV +M+ GA D++ KPF  D L +T+   +  + + 
Sbjct: 65  LAEIKVRYPHVPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDELDITVAKALQFRDIM 124

Query: 175 REVETLRENLGI-AAFQGFVGSSAAMQRVYRLIEASAASTATVFITGESGSGKELAAEAL 233
           R+   LR  L   A F   VG S A ++V + +++   S+AT+ +TGESG+GKE+ A A+
Sbjct: 125 RDNARLRAELDEHAQFDSLVGDSPAFRKVLQAVDSVRDSSATILLTGESGTGKEMVARAI 184

Query: 234 HRYGPRVKGPFVALNCGAIPRELMESEVFGHVRGSFTGAVSDRDGAAAQANGGTLFLDEI 293
           H++G R   PFVA+NC AIP  L+ESE+FGH +G+FTGAV+DR G   QA+ GTLFLDE+
Sbjct: 185 HKHGSRADKPFVAVNCAAIPEGLLESEMFGHRKGAFTGAVADRVGRFQQADKGTLFLDEV 244

Query: 294 CEMDPNLQTKLLRFLQTGMVQKVGGDRPEKVDVRIVCATNRDPLEEVKAGRFREDLYYRL 353
            +M   LQ K+LR LQ  +++ VG  R  KVDVR++ ATN++ LE V    FREDLYYRL
Sbjct: 245 GDMPLALQAKILRALQERVIEPVGDPRERKVDVRVIAATNKNLLEAVANKEFREDLYYRL 304

Query: 354 HVIPIRLPALRDREGDVLEIADHFLASIATEEKKSFRGFSPAVAQALLAYDWPGNVRQLI 413
           +V PI LPALR+R  D+  +A HF  +++    K   GFSP   QA+ AY WPGN+R+L 
Sbjct: 305 NVFPIPLPALRERVEDIAPLARHFAQTLSATAGKRITGFSPEALQAMAAYHWPGNIRELQ 364

Query: 414 NVLRNVVVLNNGPEVTLGMLPQAIADADGEAIAGEAAEGESPALFRQ-----QDIE-PLW 467
           N +    ++   P +          D  G   A   +EG   A+        QD++  L 
Sbjct: 365 NCVERATIVAAKPVI-------EDIDLPGYLFASRPSEGGVTAILSDGPGIPQDLDAALA 417

Query: 468 VVEKRAVERAIGACGGNIPRAAALLRVSP-STLYRKKQ 504
            VEK  +  A+    G    AAA + +S  S  YR K+
Sbjct: 418 EVEKAYILAALQESNGVQAAAAAKIGISERSFWYRLKK 455