Pairwise Alignments

Query, 485 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 690 a.a., methyl-accepting chemotaxis protein from Magnetospirillum magneticum AMB-1

 Score =  156 bits (395), Expect = 2e-42
 Identities = 117/306 (38%), Positives = 168/306 (54%), Gaps = 33/306 (10%)

Query: 187 ARKVAEERLRLEAAAAEAQV---TAVRGVADDLEG---SVGTALGALKDDSATMRR-AAE 239
           AR VAE+R R   A+ E +     AVR  AD + G   S   ++G+L+  +  + R A +
Sbjct: 391 ARSVAEDRTRERLASDEVRHGVDVAVRTFADRIAGLMKSSDDSMGSLRQYARDLSRLAGD 450

Query: 240 ALNGSSESSRQVSSMARDLSERTAEGVESMAQAARTMTQSVSGILESVRHSDALSRSALT 299
           A  GS E +R         ++  A  V+ +A A   +  S+  I + V     +SR A+ 
Sbjct: 451 ASGGSGEVARA--------ADGAATNVQGIASATSELLSSIGEISQVVADMAGISRQAVD 502

Query: 300 DTERATEKVAALSTAAERIGEVVGLISAVAAQTNLLALNATIEAARAGDAGKGFAVVANE 359
           +   + + V  L+ +A RIGE+V LI+ +AAQTNLLALNATIEAARAG+AGKGFAVVANE
Sbjct: 503 EARASRQAVEELTQSAGRIGEIVALINDIAAQTNLLALNATIEAARAGEAGKGFAVVANE 562

Query: 360 VKTLATQTARATDEIAAQVTGIQGATRDSAAVIATISRSMTDISATVSAIAAAMEDQGKA 419
           VK LA QT +AT++I  QV  IQ  T  ++  IA I  ++  IS   ++IA+A+E+Q  A
Sbjct: 563 VKVLANQTGKATEQIQGQVGAIQRGTATASHSIAGIDSTVGRISEMATSIASAVEEQNAA 622

Query: 420 SQLVAGTIDAVSSLAHELGEVISRMDGLTGDFSANAATMRGLSDHAVDEIDRLDQSVIAF 479
           +  +A +I   S             DG+     A A T+  + ++A    DR  +SV A 
Sbjct: 623 TSEIASSIQQAS-------------DGV----GAVAGTITHVRENAA-STDRAAESVQAA 664

Query: 480 VGRLRA 485
             RL A
Sbjct: 665 AERLAA 670



 Score = 35.4 bits (80), Expect = 6e-06
 Identities = 41/185 (22%), Positives = 73/185 (39%), Gaps = 12/185 (6%)

Query: 145 VALHAAIVIIETVTLVWVIVRMTTSFATAEQAVVEANTAREDARKVAEERLRLEAAAAEA 204
           VAL AA+ ++ ++T+V    +     A A + V         A ++  ER     +    
Sbjct: 11  VALVAAVFLVASITMVMSAYQERAQVAAAYRGVGLQGALLRLAERINFERGLYNVSLINK 70

Query: 205 QVTA------VRGVADDLEGSVGTALGALKDDSATMRRAAEALNGSSESSRQVSSMARDL 258
           Q  +      ++G+ADD + S   A  A K   A +     A     ++SR++  + R L
Sbjct: 71  QTLSPELTARLKGLADDSDTSFAAAQAAAK-GGAAVNDLLRAQQDRIKASREM--VVRQL 127

Query: 259 SERTAEGVESMAQAARTMTQSVSGILESVRHSDALSRSALTDTERATEKVAALSTAAERI 318
                EG   +A+A   +  S+    +++RH        L            L+ AA R+
Sbjct: 128 GSGAPEGHAEVAKAYSALNISIG---DAIRHEAQGLIPELNKQSGPLSDYVVLAHAASRM 184

Query: 319 GEVVG 323
             + G
Sbjct: 185 RNLAG 189