Pairwise Alignments

Query, 485 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 795 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  163 bits (412), Expect = 2e-44
 Identities = 104/286 (36%), Positives = 163/286 (56%), Gaps = 18/286 (6%)

Query: 189 KAAEERLRLEAAAAEAQVSAVRGVADDLEGSVGAALGALKNGTAAMHQAA-EALDDSSEN 247
           +AA+E  +  A A   +++A+R +AD  EGSVG  +  + +    +  A+ +    ++E 
Sbjct: 361 EAAQEEQKRRAEAD--RLAAMRKLADTFEGSVGKVIETVTSAATELEAASGQMAGTATET 418

Query: 248 SRQVSSMARDLSGRTAEGVESMAQAARTMTQSVSGILESVRHSDTLSRSALTDAERATEK 307
           S Q +++A   + + +  V+++A A   +  S+  I   V  S  +S  A  +A   T +
Sbjct: 419 SSQATTVA-SAAQQASTNVQTVASATEELASSIKEIAHQVERSQAVSHHAGDEAHTTTMQ 477

Query: 308 VAALSTAAERIGEVVGLISAVAAQTNLLALNATIEAARAGDAGKGFAVVANEVKTLATQT 367
           V ALS    +IGE+V LI+ +A+QTNLLALNATIEAARAG+AGKGFAVVA EVK LA QT
Sbjct: 478 VQALSANVGKIGEIVKLINDIASQTNLLALNATIEAARAGEAGKGFAVVAGEVKDLANQT 537

Query: 368 ARATDEIAAQVTGIQGATRDSAAVIATISRSMTDISTTVSAIAAAMEDQGQASRLVAGTI 427
           A+AT EIA Q+  +Q +TR +   I +IS+ + ++    SA+AAA+E Q  A+  +A  +
Sbjct: 538 AKATSEIAGQIQAVQDSTRVAVHAIESISKVIAEMGEISSAVAAAVEQQTAATGEIARNV 597

Query: 428 D--------------AVSTLAHELGEVISRMDSLTGDFSANAATMR 459
           +              +V   A E G+   ++   +G+ S  A  +R
Sbjct: 598 EQAAEGTQEVTRNIVSVEQAAKETGQAAEQIRESSGELSRQAEFLR 643



 Score = 33.9 bits (76), Expect = 2e-05
 Identities = 55/297 (18%), Positives = 105/297 (35%), Gaps = 24/297 (8%)

Query: 171 AATEQAVVEANTAREDTRKAAEE--RLRLEAAAAEAQVSAVRG--VADDLEGSVGAALGA 226
           A  ++A+     A+E   +A E   R+ L   A+   +  V G  +A  + G + A  G 
Sbjct: 259 ALDDEALTAMKVAKERAHQADETAGRMMLSVMASGFAIMVVIGTLIARSIYGPITAMTGV 318

Query: 227 LKNGTAAMHQAAEALDDSSENSRQVSSMARDLSGRTAEGVESMAQAARTMTQSVSGILES 286
           +           E   D+   +   +    +L G        MA++       +  + + 
Sbjct: 319 M----------GELAGDNLSVTVPFTDRGDELGG--------MAKSVGHFKDQLIRVRQL 360

Query: 287 VRHSDTLSRSALTDAERATEKVAALSTAAERIGEVVGLISAVAAQTNLLALNATIEAARA 346
               +   R A  D   A  K+A   T    +G+V+  +++ A +    +      A   
Sbjct: 361 EAAQEEQKRRAEADRLAAMRKLA--DTFEGSVGKVIETVTSAATELEAASGQMAGTATET 418

Query: 347 GDAGKGFAVVANEVKTLATQTARATDEIAAQVTGIQGATRDSAAVIATISRSMTDISTTV 406
                  A  A +  T     A AT+E+A+ +  I      S AV           +  V
Sbjct: 419 SSQATTVASAAQQASTNVQTVASATEELASSIKEIAHQVERSQAVSHHAGDEAHTTTMQV 478

Query: 407 SAIAAAMEDQGQASRLVAGTIDAVSTLAHELGEVISRMDSLTGDFSANAATMRGLSD 463
            A++A +   G+  +L+       + LA       +R       F+  A  ++ L++
Sbjct: 479 QALSANVGKIGEIVKLINDIASQTNLLALNATIEAARAGEAGKGFAVVAGEVKDLAN 535



 Score = 27.7 bits (60), Expect = 0.002
 Identities = 26/109 (23%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 215 DLEGSVGAALGALKNGTAAMHQAAEALDDSSENSRQVSSMARDLSGRTAEGVESMAQAAR 274
           ++ G + A   + +    A+   ++ + +  E S  V++     +  T E   ++ QAA 
Sbjct: 543 EIAGQIQAVQDSTRVAVHAIESISKVIAEMGEISSAVAAAVEQQTAATGEIARNVEQAAE 602

Query: 275 TMTQSVSGILESVRHSDTLSRSALTDAERATEKVAALSTAAERIGEVVG 323
             TQ V+  + SV  +   +  A   AE+  E    LS  AE +   VG
Sbjct: 603 G-TQEVTRNIVSVEQAAKETGQA---AEQIRESSGELSRQAEFLRHEVG 647