Pairwise Alignments

Query, 485 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 681 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  170 bits (431), Expect = 1e-46
 Identities = 128/381 (33%), Positives = 189/381 (49%), Gaps = 18/381 (4%)

Query: 109 DATVILAAALTIIAHNLILTYAMPAWIFPQGAD---------LGRVTLHAMVVVVEGATL 159
           DA + L   +  +   L +T+A  A I  +G           + R+      + VEG  L
Sbjct: 304 DARLFLWGQIIAVIGGLGITFAA-AGILAKGITGPIAHITNAMSRLATGDTAISVEGVDL 362

Query: 160 VWVARRLARAFAATEQAVVEANTAREDTRKAAEERLRLEAAAAEAQVSAVRGVADDLEGS 219
                 +ARA        V  N      + AAE++   EA     Q  A+  +       
Sbjct: 363 PTEEGEMARAVQ------VFRNNHLAAEKLAAEQKAEQEAKERRRQ--AIERLTAAFRQE 414

Query: 220 VGAALGALKNGTAAMHQAAEALDDSSENSRQVSSMARDLSGRTAEGVESMAQAARTMTQS 279
           V  AL A+ + T  ++ +A +L  S+++    ++     +   +  VE++A AA  ++ S
Sbjct: 415 VSGALAAVGDATRLLNNSANSLGSSAQSMEGHAAAVAAAAEEASINVETVAGAAEELSAS 474

Query: 280 VSGILESVRHSDTLSRSALTDAERATEKVAALSTAAERIGEVVGLISAVAAQTNLLALNA 339
           ++ I   V  S  +S+ A+ +AER    V  L+ AA  IGEVV +I  +A QTNLLALNA
Sbjct: 475 INEISRQVATSAQVSKQAVAEAERTNALVHGLADAARNIGEVVTMIGDIAGQTNLLALNA 534

Query: 340 TIEAARAGDAGKGFAVVANEVKTLATQTARATDEIAAQVTGIQGATRDSAAVIATISRSM 399
           TIEAARAG+AGKGFAVVANEVK LATQTARAT +I  QV  +Q AT  +   I  I   +
Sbjct: 535 TIEAARAGEAGKGFAVVANEVKHLATQTARATSQITEQVGAVQAATDQAVTAIQGIGAII 594

Query: 400 TDISTTVSAIAAAMEDQGQASRLVAGTIDAVSTLAHELGEVISRMDSLTGDFSANAATMR 459
             I+   SAIAAA+E+Q   +R +A  +   +    E+   +S + S  G+    A  + 
Sbjct: 595 ERINEVSSAIAAAVEEQDATTRDIARNVAEAAGGTREVSRHVSDVTSEAGETGKTATDVL 654

Query: 460 GLSDHAVDEIDRLDESVVAFV 480
           G       + D L+ SV  F+
Sbjct: 655 GAVTALGSQSDALNTSVQRFL 675



 Score = 40.4 bits (93), Expect = 2e-07
 Identities = 62/267 (23%), Positives = 102/267 (38%), Gaps = 44/267 (16%)

Query: 162 VARRLARAFAATEQAVVEANTAREDTRKAAEERLRLEAAAAEAQVSA--VRGVADDLEGS 219
           V+  LA    AT      AN+     +        + AAA EA ++   V G A++L  S
Sbjct: 415 VSGALAAVGDATRLLNNSANSLGSSAQSMEGHAAAVAAAAEEASINVETVAGAAEELSAS 474

Query: 220 VGAALGALKNGTAAMHQA-AEA---------LDDSSENSRQVSSMARDLSGRT-AEGVES 268
           +      +        QA AEA         L D++ N  +V +M  D++G+T    + +
Sbjct: 475 INEISRQVATSAQVSKQAVAEAERTNALVHGLADAARNIGEVVTMIGDIAGQTNLLALNA 534

Query: 269 MAQAART--MTQSVSGILESVRHSDTLSRSALTD-----------AERATEKVAALSTAA 315
             +AAR     +  + +   V+H  T +  A +             ++A   +  +    
Sbjct: 535 TIEAARAGEAGKGFAVVANEVKHLATQTARATSQITEQVGAVQAATDQAVTAIQGIGAII 594

Query: 316 ERIGEVVGLISAVA----AQTNLLALNA------TIEAAR--------AGDAGKGFAVVA 357
           ERI EV   I+A      A T  +A N       T E +R        AG+ GK    V 
Sbjct: 595 ERINEVSSAIAAAVEEQDATTRDIARNVAEAAGGTREVSRHVSDVTSEAGETGKTATDVL 654

Query: 358 NEVKTLATQTARATDEIAAQVTGIQGA 384
             V  L +Q+      +   + G++ A
Sbjct: 655 GAVTALGSQSDALNTSVQRFLAGVETA 681