Pairwise Alignments

Query, 779 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) from Rhodospirillum rubrum S1H

Subject, 854 a.a., Chaperone protein ClpB from Pseudomonas putida KT2440

 Score =  318 bits (814), Expect = 1e-90
 Identities = 195/464 (42%), Positives = 273/464 (58%), Gaps = 30/464 (6%)

Query: 2   LSRNLEQTLHRALALASQRRHEYATLEHLLLALVDDQDAV--SVLKACSVDVEKLRKQLA 59
           L+  L+  +  A +LA    H      HLL AL++ Q      +L     D+  LR+ L 
Sbjct: 6   LTSKLQLAISDAQSLAVGMDHPAIEPVHLLQALLEQQGGSIKPLLMQVGFDINGLRQGLV 65

Query: 60  EFVEHELTGLV-VAAPEGDPKPTAGFQRVVQRAAIHVQSSGREQVTGANILVALFSERES 118
           +    EL  L  +  P GD   +    R++ +A    Q  G + ++   +L+A   E   
Sbjct: 66  K----ELDQLPKIQNPTGDVNMSQDLARLLNQADRLAQQKGDQFISSELVLLAAMDENSK 121

Query: 119 HAVYFLQMQDMTRLDAVNYISHGIAKAPGHGQARAPRGADEETKSEETATVKKGREALDA 178
                L              S G++K          RG      +   A  ++ R+ALD 
Sbjct: 122 LGKLLL--------------SQGVSKKALENAINNLRGG----AAVNDANAEESRQALDK 163

Query: 179 YCVNLNEKAAEGKIDPLIGRDQEVERTIQILCRRNKNNPLLVGDPGVGKTAIVEGLARRI 238
           Y V+L ++A EGK+DP+IGRD E+ RT+Q+L RR KNNP+L+G+PGVGKTAI EGLA+RI
Sbjct: 164 YTVDLTKRAEEGKLDPVIGRDDEIRRTVQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRI 223

Query: 239 VHKEVPEVLHNATIFSLDMGALLAGTRYRGDFEERLKAVVGELEAYEG-AVLFIDEIHTV 297
           ++ EVP+ L    + +LDMGAL+AG +YRG+FEERLK+++ EL   EG  +LFIDE+HT+
Sbjct: 224 INGEVPDGLKGKRLLALDMGALIAGAKYRGEFEERLKSLLNELSKQEGQIILFIDELHTM 283

Query: 298 IGAGATSGGSMDASNLLKPALAQGLLRCVGSTTYKEFRNHFEKDRALVRRFQKIDVNEPS 357
           +GAG    G+MDA N+LKPALA+G L CVG+TT  E+R   EKD AL RRFQK+ V EPS
Sbjct: 284 VGAG-KGEGAMDAGNMLKPALARGELHCVGATTLNEYRQFIEKDAALERRFQKVLVEEPS 342

Query: 358 VEDTVKILRGIKSYYEDHHKVRYTNDAVRAAVELSNKYINDRKLPDKAIDVIDEVGAARM 417
            EDT+ ILRG+K  YE HHKV  T+ A+ AA +LS++YI DR+LPDKAID+IDE  A+R+
Sbjct: 343 EEDTIAILRGLKERYEVHHKVAITDGAIIAAAKLSHRYITDRQLPDKAIDLIDE-AASRI 401

Query: 418 LLPESRRRKTVTVRDIEEIVAKIARIPPKSVSRDDQAVLKSLER 461
            +    + + +   D   I  K+     K    +D+A  K LE+
Sbjct: 402 RMEIDSKPEVLDRLDRRLIQLKVESQALK--KEEDEAAKKRLEK 443



 Score =  273 bits (697), Expect = 4e-77
 Identities = 234/805 (29%), Positives = 388/805 (48%), Gaps = 103/805 (12%)

Query: 2   LSRNLEQTLHRALALASQRRHEYATLEHLLLALVDDQDAVSVL--------KACSVDVEK 53
           +S++L + L++A  LA Q+  ++ + E +LLA +D+   +  L        KA    +  
Sbjct: 83  MSQDLARLLNQADRLAQQKGDQFISSELVLLAAMDENSKLGKLLLSQGVSKKALENAINN 142

Query: 54  LR----------KQLAEFVEHELTGLVVAAPEGDPKPTAGFQRVVQRAAIHVQSSGR--- 100
           LR          ++  + ++     L   A EG   P  G    ++R    +Q   +   
Sbjct: 143 LRGGAAVNDANAEESRQALDKYTVDLTKRAEEGKLDPVIGRDDEIRRTVQVLQRRTKNNP 202

Query: 101 ----EQVTGANILVALFSER--ESHAVYFLQMQDMTRLDAVNYISHGIAKAPGHGQARAP 154
               E   G   +    ++R         L+ + +  LD    I+   AK  G  + R  
Sbjct: 203 VLIGEPGVGKTAIAEGLAQRIINGEVPDGLKGKRLLALDMGALIAG--AKYRGEFEERLK 260

Query: 155 RGADEETKSE--------ETATVK---KGREALDAYCVNLNEKAAEGKID---------- 193
              +E +K E        E  T+    KG  A+DA  + L    A G++           
Sbjct: 261 SLLNELSKQEGQIILFIDELHTMVGAGKGEGAMDAGNM-LKPALARGELHCVGATTLNEY 319

Query: 194 -PLIGRDQEVERTIQILCRRNKNNPLLVGDPGVGKT-AIVEGLARRIVHKEVPEVLHNAT 251
              I +D  +ER  Q          +LV +P    T AI+ GL      KE  EV H   
Sbjct: 320 RQFIEKDAALERRFQ---------KVLVEEPSEEDTIAILRGL------KERYEVHHKVA 364

Query: 252 IFSLDMGALLAGTRYRGDFEERLKAVVGELEAYEGAVLFIDEIHTVIGAGATSGGSMDAS 311
           I     GA++A  +    +       + + +  + A+  IDE        A S   M+  
Sbjct: 365 ITD---GAIIAAAKLSHRY-------ITDRQLPDKAIDLIDE--------AASRIRMEID 406

Query: 312 NLLKPALAQGLLRCVGSTTYKEFRNHFEKDRALVRRFQK----IDVNEPSVEDTVKILRG 367
           +  KP +   L R +     +      E+D A  +R +K    I+  E    D  +I   
Sbjct: 407 S--KPEVLDRLDRRLIQLKVESQALKKEEDEAAKKRLEKLTEEIERLEREYSDLEEIWAS 464

Query: 368 IKSYYEDHHKVRYTNDAVRAAVELSNKYINDRKLPDKAIDVIDEVGAARMLLPESRR--- 424
            K+  +   +++   +  R  +E + +  +  ++ +    VI ++  +  ++ +  +   
Sbjct: 465 EKAEVQGSAQIQQKIEQSRQELEAARRKGDLNRMAELQYGVIPDLERSLQMVDQHGKTDN 524

Query: 425 ---RKTVTVRDIEEIVAKIARIPPKSVSRDDQAVLKSLERDLKTMVFGQDQAIEALASAI 481
              R  VT  +I E+V+K   IP   +   ++  L  +E  L   V GQ +A+ A+A+A+
Sbjct: 525 QLLRNKVTEEEIAEVVSKWTGIPVAKMLEGEREKLLKMEELLHQRVIGQSEAVTAVANAV 584

Query: 482 KLARAGLREPTKPIGNYLFSGPTGVGKTEVARQLARIL---GIELVRFDMSEYMERHSVS 538
           + +RAGL +P +P G++LF GPTGVGKTE+ + LA  L      +VR DMSE+ME+HSV+
Sbjct: 585 RRSRAGLSDPNRPSGSFLFLGPTGVGKTELCKALAEFLFDTEEAMVRIDMSEFMEKHSVA 644

Query: 539 RLIGAPPGYVGFDQGGLLTDAVDQQPHCVLLLDEIEKAHPDLFNILLQVMDHGKLTDHNG 598
           RLIGAPPGYVG+++GG LT+AV ++P+ V+LLDE+EKAHPD+FN+LLQV++ G+LTD +G
Sbjct: 645 RLIGAPPGYVGYEEGGYLTEAVRRKPYSVVLLDEVEKAHPDVFNVLLQVLEDGRLTDSHG 704

Query: 599 KHVDFRNVILIMTTNAGAQMLAKNAMGFGRETRSGDDTEEIERSFSPEFRNRLDAIIPFA 658
           + VDFRN +++MT+N G+  + +  +   RE +     + +   F PEF NR+D ++ F 
Sbjct: 705 RTVDFRNTVIVMTSNLGSAQIQE--LVGDREAQRAAVMDAVGAHFRPEFINRIDEVVVFE 762

Query: 659 NLAAETVGMVVDKFVMELEAQLADRNVTIELTDKARSWLAEKGYDRRMGARPLARIIQET 718
            L  E +  + +  +  L ++L +R +++ L+ +A   L   GYD   GARPL R IQ  
Sbjct: 763 PLGREQIAGITEIQLGRLRSRLLERELSLSLSPEALDKLIAVGYDPVYGARPLKRAIQRW 822

Query: 719 IKKPLAEELLFGKLTKGGRVKVGVK 743
           I+ PLA+ +L GK   G  +   V+
Sbjct: 823 IENPLAQLILAGKFLPGTAITAKVE 847