Pairwise Alignments

Query, 478 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

Subject, 448 a.a., Alginate biosynthesis transcriptional regulatory protein AlgB from Pseudomonas putida KT2440

 Score =  286 bits (733), Expect = 8e-82
 Identities = 186/465 (40%), Positives = 250/465 (53%), Gaps = 28/465 (6%)

Query: 3   RILMVEDSPSNAELYATYLRASGMTVTLAGTGGQALDYLVADASAFDLVVLDLGLPDMDG 62
           RIL+V+D  +    +   L   G +V  A +  QA   L      FDL  LDL L + +G
Sbjct: 10  RILLVDDESAILRTFRYCLEDEGYSVATANSAAQAETLL--QRQVFDLCFLDLRLGEDNG 67

Query: 63  LEILRKLGGPAAMPPTVVLTGSGSVRRAVEAMREGAIDFLVKPCGADKLRTAVEEALERR 122
           L++L ++   A     V++T   ++  AV+A++ GA D+LVKPC  D+LR A  + LE R
Sbjct: 68  LDVLAQMRIQAPWMRVVIVTAHSAIDTAVDAIQAGAADYLVKPCSPDQLRLATAKQLEVR 127

Query: 123 TPTAEGRAPAADPTRAKRGPSGFLGSSPAMSNVFSLIEAAAASSTASVFITGETGTGKEL 182
             +A   A   +  + K    G    SPAM  V       A +  A++ I GE+GTGK  
Sbjct: 128 QLSARLEALEGEIRKPK---DGLDSHSPAMMAVLETARQVAITD-ANILILGESGTGKGE 183

Query: 183 CANAIHNLSDRRNGPFVAINCGAIPRELMESEIFGHRKGAFTGAINDREGAASRADGGTL 242
            A AIH  S R     V INC ++  ELMESE+FGH +GAFTGA     G  S+ADGGTL
Sbjct: 184 LARAIHGWSKRARKACVTINCPSLNAELMESELFGHTRGAFTGASESTLGRVSQADGGTL 243

Query: 243 FLDELCEMDLDLQVKLLRFIQTGTYRKVGDGADRQVNIRFVCATNRDPLVEVKAGRFRED 302
           FLDE+ +  L LQ KLLRFIQ   Y +VGD   R+ ++R + ATN +    V+  RFRED
Sbjct: 244 FLDEIGDFPLTLQPKLLRFIQDKEYERVGDPVTRRADVRILAATNLNLEEMVRESRFRED 303

Query: 303 LYYRLYVVPIHLPPLSARGDDIILLARRFLADFSKLEGKRFQEFSADALGRIMAYRWPGN 362
           L YRL V+ +HLPPL  R +DI++LA RFLA F K   +  + FS +A   ++ YRWPGN
Sbjct: 304 LLYRLNVITLHLPPLRERSEDILILADRFLARFVKEYSRPARGFSDEARTALLNYRWPGN 363

Query: 363 VRQLENVVRNIVVLNDGVTVEPTMLPPPLDCVEAVVSLPVDPQSATGAVVGGGTLSLDEI 422
           +R+L NVV    ++     VE             +  L +  Q A  A   G  LSLD  
Sbjct: 364 IRELRNVVERASIICPQERVE-------------ISHLGMGEQPAGSAPRVGAALSLD-- 408

Query: 423 LARPLAELEAMAIDAALRLSDNNVTRAARLLDVSPSTIYRKHSAY 467
                 ELE   I A L  SD  + +AA+ L +  ST+YRK   Y
Sbjct: 409 ------ELERAHIGAVLAASD-TLDQAAKTLGIDASTLYRKRKQY 446