Pairwise Alignments

Query, 478 a.a., Two Component, Sigma54 Specific, Transcriptional Regulator, Fis family (NCBI) from Rhodospirillum rubrum S1H

Subject, 513 a.a., sigma 54 dependent transcriptional activator from Agrobacterium fabrum C58

 Score =  300 bits (768), Expect = 8e-86
 Identities = 195/503 (38%), Positives = 260/503 (51%), Gaps = 45/503 (8%)

Query: 4   ILMVEDSPSNAELYATYLRASGMTVTLAGTGGQALDYLVADASAFDLVVLDLGLPDMDGL 63
           +L+++D P    L    +   G    LA  G   L+ L   +   +++VLDL +P+MDGL
Sbjct: 5   VLVIDDDPVQRRLLKNAVERYGHLALLAENGRAGLELLKQYSGEINVIVLDLMMPEMDGL 64

Query: 64  EILRKLGGPAAMPPTVVLTGSGSVRRAVEAMREGAIDFLVKPCGADKLRTAVEEALERRT 123
             L+ +G      P +V TG G +   V+AMR GA DF+VKP   +++  A+  AL+   
Sbjct: 65  AFLKAVGELGTDVPVIVQTGQGGIDTVVQAMRAGAFDFVVKPVSPERIGAAISNALKLDR 124

Query: 124 PTAEGRAPAADPTRAKRGPSGFLGSSPAMSNVFSLIEAAAASSTASVFITGETGTGKELC 183
             A+ R      + A    +  + +SPAM  V  L + AA SS   V + GE+G GKE+ 
Sbjct: 125 KEAKARTGRRGRSNAVNF-TDIVSASPAMLRVIELAQRAAQSSIP-VVLEGESGVGKEMV 182

Query: 184 ANAIHNLSDRRNGPFVAINCGAIPRELMESEIFGHRKGAFTGAINDREGAASRADGGTLF 243
           A AI +  DR N PF+ +NCGAIP  L+ES +FGH KGAFTGA     G    ADGGTLF
Sbjct: 183 ARAIQSGGDRANKPFITVNCGAIPHNLVESILFGHEKGAFTGATEKHVGKFMEADGGTLF 242

Query: 244 LDELCEMDLDLQVKLLRFIQTGTYRKVGDGADRQVNIRFVCATNRDPLVEVKAGRFREDL 303
           LDE+ ++ LD+QVKLLR +Q G    VG    ++VN+R + ATN++ + EVK GRFREDL
Sbjct: 243 LDEIGDLPLDVQVKLLRAVQQGEIETVGSARVQKVNVRLISATNKNLIEEVKEGRFREDL 302

Query: 304 YYRLYVVPIHLPPLSARGDDIILLARRFLADFS---KLEGKRFQEFSADALGRIMAYRWP 360
           YYRL V PI +P L  R +DI  LAR F   FS   KL         A AL  + AY WP
Sbjct: 303 YYRLNVFPITIPALRRRKEDIPHLARVFAERFSAEQKLPNP--VGLDASALALLTAYDWP 360

Query: 361 GNVRQLENVVRNIVVLNDGVTVEPT----------------------------------M 386
           GN+RQLEN V   VVL+ G  +  +                                   
Sbjct: 361 GNIRQLENAVFRAVVLSQGSELSDSDFPQIALQLPEFSNGDDGDDIIRSPSGSSLKLAAY 420

Query: 387 LPPPLDCVEAVVSLPVDPQSATGAVVGGGTLSL--DEILARPLAELEAMAIDAALRLSDN 444
            PPP     AV+  P D   +T    GG  +S   D    R LAE+E   I  ALR    
Sbjct: 421 SPPPAAESHAVIEEPSD--ISTTIYRGGNLISSTDDSGNIRKLAEIEEELIRFALRFYRG 478

Query: 445 NVTRAARLLDVSPSTIYRKHSAY 467
            +++ AR L +  ST+YRK   Y
Sbjct: 479 QMSQVARKLGIGRSTLYRKLKDY 501