Pairwise Alignments

Query, 243 a.a., Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine (NCBI) from Rhodospirillum rubrum S1H

Subject, 252 a.a., Glutamate/aspartate ABC transporter, permease protein GltJ (TC 3.A.1.3.4) from Variovorax sp. SCN45

 Score =  200 bits (508), Expect = 3e-56
 Identities = 107/222 (48%), Positives = 152/222 (68%), Gaps = 10/222 (4%)

Query: 20  TYLDTLMSGLYWTMATALAAWALALVLGGMIGIMRTLP-SKGLQRLGAAYVEVFRNIPLL 78
           TYL  +++   WT++ AL A  +ALV+G +IG +RTLP S  L R G A+VE+FRN+PLL
Sbjct: 30  TYLQWMLNAWGWTVSVALTALLVALVVGSIIGTLRTLPDSPWLVRFGNAWVELFRNVPLL 89

Query: 79  VQLFLWYFVLPELLPPSWGLWLKQIPDAPFYTSVVGIGCFTSARVAEQIRAGITTLPRGQ 138
           VQ+F+WYFVLP+++P      ++ +P  PF   V  +G FTSAR+AEQ+R+GI  LPRGQ
Sbjct: 90  VQVFIWYFVLPKMIPA-----MRDLP--PFVLVVCALGFFTSARIAEQLRSGIQALPRGQ 142

Query: 139 AMASTALGLTLPQTYRYILLPMALRIVLPPLTSEFLNTVKNTSVALTISLMELTA-RTRA 197
             A  A+G T PQ YR++LLPMA RI++PPLTSE +N  KN+SVA  +S+ ELT    +A
Sbjct: 143 RYAGMAVGFTTPQYYRFVLLPMAYRIIMPPLTSESMNIFKNSSVAFAVSIPELTQFYLQA 202

Query: 198 MQEFSFQVFEAFAAATLIYVLINVVVVAVMRVIEHRVAVPGF 239
            +E S Q+   +    ++YV+  +++  +M  IE +V VPGF
Sbjct: 203 GEETSAQI-PIYIGVVILYVISAMLINRIMTFIERKVRVPGF 243