Pairwise Alignments

Query, 561 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 563 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

 Score =  388 bits (996), Expect = e-112
 Identities = 241/569 (42%), Positives = 341/569 (59%), Gaps = 17/569 (2%)

Query: 1   MTSLNNLSVGRKLILVFSLLFLMVACLGGFSIKALSDMNGAATDVSQ------TRLPAID 54
           M+ +NN+ +  KL   F  L  +    G  S+  ++DM+ A  D++       T L  I+
Sbjct: 2   MSVINNIKIPMKLAGAFFTLIFIFLFSGVISLYLMNDMDDATADITDNWHLTITSLDNIE 61

Query: 55  KARSLQFLISRLRTNQMAYMVAQGSGLETTRKTVEQTEKVLAATRAEYEKLMSSAEEREA 114
           K      LI   R  Q           +   K + +T  VL+     + K ++S  E + 
Sbjct: 62  KT-----LIEYRRWEQTLAAARTPDQSDRADKMLTKTRVVLSEISKNHLKYLASKREADI 116

Query: 115 YKTFADNYAGFAAGLVRIADLSKAGRIDEARELTWGETRPFYLALVKSTDRLTELSQIQA 174
           Y  F      F     +  + +K G   +   +  GE+   Y+ + K    L  L Q+ A
Sbjct: 117 YNEFVSYLQPFFQESDKAREFAKKGDASQVNTVLLGES---YVIIGKMQTVLDSLVQLNA 173

Query: 175 -AVAAANI--DHTNRIARIGIIAALIAVLIVAAVAGALLRQTIAAPLLALRATMERLARD 231
             + AAN   D +   A+I     L    I+A +AG +LR  IA P+ A+   M+RLA  
Sbjct: 174 EGMKAANQRQDDSYETAKIVTYFVLTFATIIAVLAGLILRSAIAKPVSAMTEAMKRLAEG 233

Query: 232 DTAVDIPGHNRKDEVGAMARAVLVFKDSMIESQGLRARENAERASQEQRAATLSLLTQDF 291
           D ++DIP   R+DE+GAMA AV VFK++ I +  L   +  E+A++  RA T+  LT +F
Sbjct: 234 DKSIDIPARGRRDEIGAMAEAVQVFKENAIRADRLAEDQRKEQAARTARAQTIETLTTNF 293

Query: 292 DTKASSVINDVAEAAGTMQTTASQLTQATESTAEQSTAVAAAAQEASTNVQTVAAAAEEL 351
           D K S+++  V  A   +  TA  +   +E  ++Q+T VAAA+++ASTNVQTVA+AAEEL
Sbjct: 294 DGKISNLLTLVEGALTELNATAQTMQSNSERASQQATTVAAASEQASTNVQTVASAAEEL 353

Query: 352 TSSIGEISRQIAQASHVSQKAVDQAAHTTGIVGGLEQAAKRIGEVVAMINDIASQTNLLA 411
           +++I EI RQ+ ++S  S+ A ++A  T  IV  L  ++ +IG+V+ +INDIASQTNLLA
Sbjct: 354 SNAIVEIGRQVERSSATSKAASEEAERTNKIVLSLADSSLKIGDVIGLINDIASQTNLLA 413

Query: 412 LNATIEAARAGDAGKGFAVVAGEVKSLANQTARATDDITQQIGSVQTATGAAVQAINEIA 471
           LNATIEAARAGDAGKGFAVVAGEVKSLANQTA+AT+ IT QIGSVQ+AT  AV AIN I+
Sbjct: 414 LNATIEAARAGDAGKGFAVVAGEVKSLANQTAKATEGITAQIGSVQSATQEAVTAINGIS 473

Query: 472 TTIGEINEISANIAAAMEQQGAATQEIARNVEQAATGTDQVTRNIHGVNQTVDNTGQSAK 531
           T IGEINEIS  IAAA+E+Q AAT EIARN +QAA GT +++ N  G+ QT   TG ++ 
Sbjct: 474 TRIGEINEISTGIAAAVEEQSAATGEIARNAQQAAQGTQEISANNAGMTQTSRETGAASG 533

Query: 532 DVLNAATRLRDESAAMQTLVTTFLDKVRA 560
            VL+AA  L  E+A+++ +V +FLD VR+
Sbjct: 534 RVLSAAQALEKETASLKDVVASFLDGVRS 562



 Score = 54.3 bits (129), Expect = 1e-11
 Identities = 55/266 (20%), Positives = 101/266 (37%), Gaps = 9/266 (3%)

Query: 201 IVAAVAGALLRQTIAAPLLALRATMERLARDDTAVDIPGHNRKDEVGAMARAVLVFKDSM 260
           ++  V GAL      A    +++  ER ++  T V          V  +A A     +++
Sbjct: 300 LLTLVEGALTELNATAQ--TMQSNSERASQQATTVAAASEQASTNVQTVASAAEELSNAI 357

Query: 261 IE--SQGLRARENAERASQE-QRAATLSLLTQDFDTKASSVINDVAEAAGTMQTTASQLT 317
           +E   Q  R+   ++ AS+E +R   + L   D   K   VI  + + A      A   T
Sbjct: 358 VEIGRQVERSSATSKAASEEAERTNKIVLSLADSSLKIGDVIGLINDIASQTNLLALNAT 417

Query: 318 QATESTAEQSTAVAAAAQEASTNVQTVAAAAEELTSSIGEISRQIAQA----SHVSQKAV 373
                  +     A  A E  +     A A E +T+ IG +     +A    + +S +  
Sbjct: 418 IEAARAGDAGKGFAVVAGEVKSLANQTAKATEGITAQIGSVQSATQEAVTAINGISTRIG 477

Query: 374 DQAAHTTGIVGGLEQAAKRIGEVVAMINDIASQTNLLALNATIEAARAGDAGKGFAVVAG 433
           +    +TGI   +E+ +   GE+       A  T  ++ N       + + G     V  
Sbjct: 478 EINEISTGIAAAVEEQSAATGEIARNAQQAAQGTQEISANNAGMTQTSRETGAASGRVLS 537

Query: 434 EVKSLANQTARATDDITQQIGSVQTA 459
             ++L  +TA   D +   +  V++A
Sbjct: 538 AAQALEKETASLKDVVASFLDGVRSA 563