Pairwise Alignments

Query, 823 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 734 a.a., methyl-accepting chemotaxis protein from Magnetospirillum magneticum AMB-1

 Score =  181 bits (459), Expect = 1e-49
 Identities = 113/275 (41%), Positives = 157/275 (57%), Gaps = 11/275 (4%)

Query: 549 MADDFEGKVRSVASAVSDSAQKLSHDSEDMRRISEGVSQKSSNVAAASEEMGINMQTVAA 608
           MA+  E + R+    +++  ++++ ++  M   +  V   S +VAAA+ +   N QTVAA
Sbjct: 354 MAETVERETRAAVDRIAEMTRRMADNAGGMALSASAVGDNSQSVAAAATQALANAQTVAA 413

Query: 609 ATNELTASQGEIARTISLTANGATKAAESVTTAVDRVRGLEKAAADIGAVIALITDIASQ 668
           A  EL+AS  EIA  +   +   + A E+   A   +  L +    IG V  LI DIASQ
Sbjct: 414 AAEELSASIHEIANQVGTASTVTSTAVEASNQASRTISQLSETVNRIGEVANLINDIASQ 473

Query: 669 TNLLALNATIEAARAGEAGKGFAVVAGEVKALANQTARATDTIRATVVDMQQWMGQAVDS 728
           TNLLALNATIEAARAGEAGKGFAVVA EVK LANQTA+AT+ I A +V +Q     AV S
Sbjct: 474 TNLLALNATIEAARAGEAGKGFAVVANEVKNLANQTAKATEEITAQIVAIQTTTQDAVRS 533

Query: 729 ITEVNDIVIGMREQASGAAAATEQQTSATSEITRNVEQASIASREVGLHIGSVASEAMQA 788
           + E+   +  ++  ++  A A E+Q +AT EI RNV Q S A+ EV   I  V++EA   
Sbjct: 534 VGEITQAIGDVQGVSAAVATAIEEQGAATQEIARNVAQTSDAANEVADRIAKVSTEA--- 590

Query: 789 LENTQGIKAAADDLSASARQLEKEVDGFLSHLREV 823
                   A   + +A    +  EV G + HLRE+
Sbjct: 591 --------AHTGERAAQVGSVSSEVAGGIDHLREI 617



 Score = 46.2 bits (108), Expect = 7e-09
 Identities = 63/333 (18%), Positives = 120/333 (36%), Gaps = 26/333 (7%)

Query: 380 AGGISRPLVRVAQAISQISGGKTDITIVGLTRKDELGTMARATDALRTSVDEAFKLKQMV 439
           A  I RPL  +   + +++ G   + I    R DE+G MAR+    +  + E  +L+   
Sbjct: 277 ARSIYRPLTAMTGVMGRLAKGDMTVEIPDQDRGDEVGAMARSVQRFKEDLTEVERLRAAQ 336

Query: 440 ELQPTPTLLCHPADL--TITYMNAAGRTLLDHVLKGRGLSAAQAMGHPANEFHPSPGEMR 497
           E +         A L      +    R  +D + +     A  A G   +          
Sbjct: 337 EEERRKAERDKIAALQGMAETVERETRAAVDRIAEMTRRMADNAGGMALSASAVGDNSQS 396

Query: 498 RRATTPSAMPFKERFTLDGVIIESNVTPIFDQGGAFLGPMLNWTDVTRYVRMADDFEGKV 557
             A    A+   +        + +++  I +Q G                         V
Sbjct: 397 VAAAATQALANAQTVAAAAEELSASIHEIANQVGT---------------------ASTV 435

Query: 558 RSVASAVSDSAQK-LSHDSEDMRRISEGVSQKSSNVAAASEEMGINMQTVAAATNELTAS 616
            S A   S+ A + +S  SE + RI E V+   +++A+ +  + +N    AA   E    
Sbjct: 436 TSTAVEASNQASRTISQLSETVNRIGE-VANLINDIASQTNLLALNATIEAARAGEAGKG 494

Query: 617 QGEIARTISLTANGATKAAESVTTAVDRVR-GLEKAAADIGAVIALITDIASQTNLLALN 675
              +A  +   AN   KA E +T  +  ++   + A   +G +   I D+   +  +A  
Sbjct: 495 FAVVANEVKNLANQTAKATEEITAQIVAIQTTTQDAVRSVGEITQAIGDVQGVSAAVATA 554

Query: 676 ATIEAARAGEAGKGFAVVAGEVKALANQTARAT 708
              + A   E  +  A  +     +A++ A+ +
Sbjct: 555 IEEQGAATQEIARNVAQTSDAANEVADRIAKVS 587



 Score = 28.5 bits (62), Expect = 0.001
 Identities = 50/256 (19%), Positives = 91/256 (35%), Gaps = 32/256 (12%)

Query: 600 GINMQTVAAATNELTASQGEIARTISLTANGATKAAESVTTAVDRVRGLEKAAADIGAVI 659
           G       AA+   +A +  IA  ++        AA+++  + D  + + +  A +   +
Sbjct: 170 GTEFDKALAASALSSADRAPIAERMAAYQRDFRLAAQAMLDSRDSAKVMSETYAAMAPAV 229

Query: 660 ALITDIASQ-----------TNLLALNATIEAARAGEAGK---GFAVVAGEVKALANQT- 704
             + D A Q            NL A  A      AG A     G A+     + L   T 
Sbjct: 230 QALGDAARQGMEAARDEADRVNLSAGRAMTWVMLAGFAAMLVIGTAIARSIYRPLTAMTG 289

Query: 705 -----ARATDTIRATVVDMQQWMGQAVDSI-------TEVNDIVIGMREQASGA-----A 747
                A+   T+     D    +G    S+       TEV  +     E+   A     A
Sbjct: 290 VMGRLAKGDMTVEIPDQDRGDEVGAMARSVQRFKEDLTEVERLRAAQEEERRKAERDKIA 349

Query: 748 AATEQQTSATSEITRNVEQASIASREVGLHIGSVASEAMQALENTQGIKAAADDLSASAR 807
           A      +   E    V++ +  +R +  + G +A  A    +N+Q + AAA    A+A+
Sbjct: 350 ALQGMAETVERETRAAVDRIAEMTRRMADNAGGMALSASAVGDNSQSVAAAATQALANAQ 409

Query: 808 QLEKEVDGFLSHLREV 823
            +    +   + + E+
Sbjct: 410 TVAAAAEELSASIHEI 425