Pairwise Alignments

Query, 823 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 569 a.a., methyl-accepting chemotaxis protein from Magnetospirillum magneticum AMB-1

 Score =  177 bits (450), Expect = 1e-48
 Identities = 108/263 (41%), Positives = 155/263 (58%)

Query: 549 MADDFEGKVRSVASAVSDSAQKLSHDSEDMRRISEGVSQKSSNVAAASEEMGINMQTVAA 608
           MA   E +  +    V +    +S  +++M+  +  V  K+ +VAAA+E+   N QTVAA
Sbjct: 293 MAATVEREAAAAVGRVGEHTGAVSDRADEMQVSASRVDAKAQSVAAAAEQSLANAQTVAA 352

Query: 609 ATNELTASQGEIARTISLTANGATKAAESVTTAVDRVRGLEKAAADIGAVIALITDIASQ 668
           A  ELTAS G+I+  I  +A    +A  +   A D +  L +A A IG V ALI DIASQ
Sbjct: 353 AAEELTASIGQISSQIGHSAQVTRQAVSTAGRAQDTIGELTRAVARIGDVAALIADIASQ 412

Query: 669 TNLLALNATIEAARAGEAGKGFAVVAGEVKALANQTARATDTIRATVVDMQQWMGQAVDS 728
           TNLLALNATIEAARAG+AGKGFAVVA EVK LANQT+++T+ I   V +++      V +
Sbjct: 413 TNLLALNATIEAARAGDAGKGFAVVANEVKNLANQTSKSTEEINRQVAEIRSVTDNTVVA 472

Query: 729 ITEVNDIVIGMREQASGAAAATEQQTSATSEITRNVEQASIASREVGLHIGSVASEAMQA 788
           + +V   +  +       A A  QQ  AT EI RN+ Q + A++EV  +IG V+ EA   
Sbjct: 473 VQDVIGAITEIEHIGETIAQAVGQQGEATQEIARNIVQTTAAAQEVSSNIGEVSQEAANT 532

Query: 789 LENTQGIKAAADDLSASARQLEK 811
            E+   ++  A ++S+S   L++
Sbjct: 533 GEHAARVREMAREVSSSIADLQQ 555



 Score = 51.6 bits (122), Expect = 1e-10
 Identities = 82/385 (21%), Positives = 143/385 (37%), Gaps = 38/385 (9%)

Query: 364 VGVVVAILGIGLVWLSAGGISRPLVRVAQAISQISGGKTDITIVGLTRKDELGTMARATD 423
           V   + ++ +G+  L    I+ PL+   QA+  IS G  ++ + G    DE+G+MAR   
Sbjct: 200 VTAALMLVFVGISLLVVKSITGPLMHQVQAMRSISKGHLEVPVDGTEAGDEVGSMAR--- 256

Query: 424 ALRTSVDEAFKLKQMVELQPTPTLLCHPADLTITYMNAAGRTLLDHVLKGRGLSAAQAMG 483
           AL+   D A +         T  L    A +  T    A R  LD +       AA A+G
Sbjct: 257 ALKVFKDNALE---------TERLRAEQAGMAAT-AERAKRQALDTMAATVEREAAAAVG 306

Query: 484 H----------PANEFHPSPGEMRRRATTPSAMPFKERFTLDGVIIESNVTPIFDQGGAF 533
                       A+E   S   +  +A + +A    E+   +   + +    +    G  
Sbjct: 307 RVGEHTGAVSDRADEMQVSASRVDAKAQSVAAA--AEQSLANAQTVAAAAEELTASIGQI 364

Query: 534 LGPMLNWTDVTRY----VRMADDFEGKVRSVASAVSDSAQKLSHDSEDMRRISEGVSQKS 589
              + +   VTR        A D  G++    + + D A  ++  +     ++   + ++
Sbjct: 365 SSQIGHSAQVTRQAVSTAGRAQDTIGELTRAVARIGDVAALIADIASQTNLLALNATIEA 424

Query: 590 SNVAAASEEMGINMQTVAAATNELTASQGEIARTISLTANGATKAAESVTTAVDRVRGLE 649
           +    A +   +    V    N+ + S  EI R ++          ++   AV  V G  
Sbjct: 425 ARAGDAGKGFAVVANEVKNLANQTSKSTEEINRQVA----EIRSVTDNTVVAVQDVIGAI 480

Query: 650 KAAADIGAVIA-LITDIASQTNLLALNATIEAARAGEAGKGFAVVAGEVKALANQTARAT 708
                IG  IA  +      T  +A N     A A E       V+ E        AR  
Sbjct: 481 TEIEHIGETIAQAVGQQGEATQEIARNIVQTTAAAQEVSSNIGEVSQEAANTGEHAARVR 540

Query: 709 DTIR---ATVVDMQQWMGQAV-DSI 729
           +  R   +++ D+QQ + Q V DS+
Sbjct: 541 EMAREVSSSIADLQQVLVQVVHDSV 565



 Score = 43.5 bits (101), Expect = 3e-08
 Identities = 47/214 (21%), Positives = 86/214 (40%), Gaps = 19/214 (8%)

Query: 606 VAAATNELTASQGEIARTISLTANGATKAAESVTTAVDRVRGLEKAAADIGAVIALITDI 665
           + AA   +TA+ G  A+    TA  A +    VT A+  V         +  V ++   +
Sbjct: 168 IEAAQGLITAAAGNAAQATRDTAEAAGQRFWMVTAALMLVF----VGISLLVVKSITGPL 223

Query: 666 ASQTNLLA------LNATIEAARAGEAGKGFAVVAGEVKALANQTARATDTIRATVVDMQ 719
             Q   +       L   ++   AG+     A      K  A +T R            +
Sbjct: 224 MHQVQAMRSISKGHLEVPVDGTEAGDEVGSMARALKVFKDNALETERLRAEQAGMAATAE 283

Query: 720 QWMGQAVDSITEVNDIVIGMREQASGAAAATEQQTSATSEITRNVEQASIASREVGLHIG 779
           +   QA+D++         +  +A+ A     + T A S+     ++  +++  V     
Sbjct: 284 RAKRQALDTMAAT------VEREAAAAVGRVGEHTGAVSD---RADEMQVSASRVDAKAQ 334

Query: 780 SVASEAMQALENTQGIKAAADDLSASARQLEKEV 813
           SVA+ A Q+L N Q + AAA++L+AS  Q+  ++
Sbjct: 335 SVAAAAEQSLANAQTVAAAAEELTASIGQISSQI 368



 Score = 37.0 bits (84), Expect = 3e-06
 Identities = 56/269 (20%), Positives = 100/269 (37%), Gaps = 24/269 (8%)

Query: 571 LSHDSEDMRRISEGVSQKSSNVAAASEEMGINMQTV------AAATNELTASQGEIARTI 624
           L H  + MR IS+G  +   +   A +E+G   + +      A  T  L A Q  +A T 
Sbjct: 223 LMHQVQAMRSISKGHLEVPVDGTEAGDEVGSMARALKVFKDNALETERLRAEQAGMAATA 282

Query: 625 SLTANGATKAAESVTTAVDRVRGLEKAAADIGAV---IALITDIASQTNLLALNATIEAA 681
                   +A +++   V+R     +AAA +G V      ++D A +  + A     +A 
Sbjct: 283 E---RAKRQALDTMAATVER-----EAAAAVGRVGEHTGAVSDRADEMQVSASRVDAKAQ 334

Query: 682 RAGEAGKGFAVVAGEVKALANQTARATDTIRATVVDMQQWMGQAV-------DSITEVND 734
               A +     A  V A A +   +   I + +    Q   QAV       D+I E+  
Sbjct: 335 SVAAAAEQSLANAQTVAAAAEELTASIGQISSQIGHSAQVTRQAVSTAGRAQDTIGELTR 394

Query: 735 IVIGMREQASGAAAATEQQTSATSEITRNVEQASIASREVGLHIGSVASEAMQALENTQG 794
            V  + + A+  A    Q        T    +A  A +   +    V + A Q  ++T+ 
Sbjct: 395 AVARIGDVAALIADIASQTNLLALNATIEAARAGDAGKGFAVVANEVKNLANQTSKSTEE 454

Query: 795 IKAAADDLSASARQLEKEVDGFLSHLREV 823
           I     ++ +        V   +  + E+
Sbjct: 455 INRQVAEIRSVTDNTVVAVQDVIGAITEI 483