Pairwise Alignments

Query, 333 a.a., chaperone DnaJ (NCBI) from Rhodospirillum rubrum S1H

Subject, 319 a.a., Curved DNA-binding protein from Pseudomonas putida KT2440

 Score =  163 bits (413), Expect = 5e-45
 Identities = 109/323 (33%), Positives = 163/323 (50%), Gaps = 26/323 (8%)

Query: 3   KDPYRILGVGKDATADDIRKAYRKLAKASHPDLHPGDPQAAATFRELAAAHDILGDSAKR 62
           KD Y+ILGV   A    I+ AYRKLA+  HPD+   +  A   F+E   A+++LGD+ KR
Sbjct: 4   KDYYKILGVEPTADEKAIKAAYRKLARKYHPDVSK-ERDAEEKFKEANEAYEVLGDAQKR 62

Query: 63  ARFDRGEIDASGAERAPERPSSAPGGPGS-GASSRYYYRDYADAGATGGYGTTAGFEDFE 121
           A FD  EI   G +    RP  AP G  S G    +   D++D  ++   G +AG     
Sbjct: 63  AEFD--EIRKYGGQHG--RPFQAPPGWESRGGGGGFEGGDFSDFFSSIFGGRSAG----- 113

Query: 122 DLSDLFSAGLGRGRKGPRPGRDLRFHLTLDFLDAANGLRKRVTLP-------------DG 168
              + F     + R   R G+D+   L +   +  +   K+++                 
Sbjct: 114 --GNPFGGARQQQRSAGRRGQDVELELAVFLEETLSKESKQISFQVPQTNAMGQRTGFTT 171

Query: 169 PVLDLTIPPGTRDGEILRLKGKGAPGLNGGEAGDGLVEISVPPHPAFQRDGDDIVIEVPI 228
             L++ IP G  DGE +RLKG+GAPG  GG  GD  + I + PHP F  +G D++I VP+
Sbjct: 172 KTLNVRIPAGVTDGERIRLKGQGAPGSGGGANGDLFLTIRMAPHPLFDVEGHDLIITVPL 231

Query: 229 TLDEAVLGGKIEVPTISGKVAMTLPPGTTSGDVLRLRGKGIHPANRPAGDQRVILKIALP 288
              EA LG K+ VPT+ GK+ +T+ P + SG  LR+ GKG+       G+    LK+ +P
Sbjct: 232 APWEAALGAKVAVPTLDGKINLTIRPDSQSGQRLRVPGKGLANKQGERGNLYAQLKVVMP 291

Query: 289 PAIDGALANFLSQWRKDHPYDPR 311
           PA D +     ++  +   ++PR
Sbjct: 292 PASDESARELWTKLSEKAAFNPR 314