Pairwise Alignments

Query, 599 a.a., ErfK/YbiS/YcfS/YnhG (NCBI) from Rhodospirillum rubrum S1H

Subject, 579 a.a., L,D-transpeptidase from Pectobacterium carotovorum WPP14

 Score =  194 bits (493), Expect = 9e-54
 Identities = 127/389 (32%), Positives = 195/389 (50%), Gaps = 33/389 (8%)

Query: 217 FLATLAPPTPQYDLLRQGLVRYQALARDGGWPTDLADGASIKPGDRDPRLPEMRRRLAAE 276
           ++ +LAP   QY  + + L     L  +  WP+ L+   S++P  +   L  +R  L   
Sbjct: 185 YVVSLAPQHSQYAKMHEALKTM--LTDNRPWPS-LSLAESLRPEQQSRELAVLREILQRT 241

Query: 277 GLVVGSDP----------TFIGPPDAELLDDF----------LVEAVRIFQAAHGLSADG 316
           G++  ++           T +      L+D            LV+AV+ FQ   GL  DG
Sbjct: 242 GMLSSTESITLFNENTAATTVSTGQVPLVDGSGTSDDRYTGELVDAVKRFQHWQGLEDDG 301

Query: 317 VIGRGTLVDMNTTPAQRITQIRVALERWRLLPRALGQTHLLVNVPQYQLYLNEGRTTVLS 376
           VIG+ T   +N +P  R T + + ++R RLLP  +  T ++VN+P Y L   +     LS
Sbjct: 302 VIGKRTRDWLNVSPQMRATLLALNIQRLRLLPDNV-HTGIMVNIPNYSLIYYQDGAERLS 360

Query: 377 MRVAVGRQDFETPLFSDTLRYMEFNPYWNVPISIAQAEVIPKQIENSAYLAKKGFTVLPR 436
            RV VG+   +TPL S +L  +  NP WNVP ++ + ++IPK + +  YL + G+TVL  
Sbjct: 361 SRVIVGQPKRKTPLMSSSLYNVVVNPPWNVPTTLTRQDIIPKVVRDPGYLQRHGYTVL-- 418

Query: 437 GVEGWD---DGVGHESVDWKADAARS--YRLRQDPGPANPLGTVKFMFPNEYAVYLHDTN 491
              GW    + +    +DW+  +A    YRLRQ PG  N LG  KF  PN  A+YLHDT 
Sbjct: 419 --SGWSQDAEAIDPSMIDWQMVSAERFPYRLRQAPGANNSLGRYKFNMPNSEAIYLHDTP 476

Query: 492 SRGVFDRSARAVSHGCVRVQEPALLANYILERFTDRIGKTAADFSGPTPKVVRLNRPLPI 551
           +  +F R  RA+S GCVRV + + LA+ +L+       + ++         V +   +P+
Sbjct: 477 NHNLFQRDIRALSSGCVRVNKASELASMLLQDAGWNNSRISSTLDQGNTTFVSMKHRIPV 536

Query: 552 HLVYITAWGGEGGKVAFVRDIYAKDRAIR 580
           +L Y+TAW  E G+  F  DIY  D   R
Sbjct: 537 NLYYLTAWVAEDGRPQFRTDIYNYDDTAR 565