Pairwise Alignments

Query, 276 a.a., ABC transporter component (NCBI) from Rhodospirillum rubrum S1H

Subject, 555 a.a., oligopeptide ABC transporter ATPase from Agrobacterium fabrum C58

 Score =  214 bits (544), Expect = 4e-60
 Identities = 121/257 (47%), Positives = 169/257 (65%), Gaps = 7/257 (2%)

Query: 6   LIDVDGLNVSFSSDKGTVHAVRDVSFTLGR-EKLAIVGESGSGKSQTGRAILGLTPGKVS 64
           +ID   + V+F  + GTV AV+D+SF L R E +AIVGESGSGKS T R I+GL   + S
Sbjct: 25  IIDARNIAVTFKVEHGTVEAVKDISFQLYRGETIAIVGESGSGKSVTARTIMGLLTKRAS 84

Query: 65  ARRMS---FHDIDLRDLSARGWRSIRGKRIGMVMQDPKYSLNPVMTIGEQLMEAARPLAD 121
             + +   F+  D+   S+R  R++RG RI M+ Q+P  SLNP+ TIG Q++EA R  + 
Sbjct: 85  VSKSATVRFNGDDILRFSSRQRRALRGNRISMIFQEPMSSLNPIYTIGSQIVEAIRVHSR 144

Query: 122 L--KSARLRSMEMLEAVRIRDPERVFRAWPHELSGGMGQRAMIAMMLLPEPEVLIADEPT 179
           L  K A  R++++L  V+I +PE   + +PH+LSGG  QR MIAM L  +P+VLIADEPT
Sbjct: 145 LSRKEAEARALDLLRQVQIPEPEARLKQYPHQLSGGQRQRVMIAMALSNDPDVLIADEPT 204

Query: 180 SALDVTVRLQVLAILDDLVRKRDMGLIFISHDLNLVRTFSDRVLIMVGGRIVETLAASAL 239
           +ALDVTV+ Q+L ++ DL +KR M ++ I+HDL +V+ FSD V +M  G + E      L
Sbjct: 205 TALDVTVQAQILNLIRDLQKKRGMAVVLITHDLTIVKQFSDYVYVMQHGEMREHNTTERL 264

Query: 240 EEA-RHPYTRGLLACVP 255
             A +HPYT+ LLA  P
Sbjct: 265 FAAPQHPYTKRLLASEP 281



 Score =  131 bits (329), Expect = 4e-35
 Identities = 95/239 (39%), Positives = 130/239 (54%), Gaps = 17/239 (7%)

Query: 6   LIDVDGLNVSFSSDKGTVH--------AVRDVSFTLGR-EKLAIVGESGSGKSQTGRAIL 56
           L+   G+ VSF    G +         AV  +  TL R E L +VGESGSGK+  G+++L
Sbjct: 295 LLTASGVRVSFMMRYGGLFKPELKELIAVDSLGLTLKRHETLGLVGESGSGKTTFGQSLL 354

Query: 57  GLTPGKVSARRMSFHDIDLRDLSARGWRSIRGKRIGMVMQDPKYSLNPVMTIGEQLMEAA 116
            L              +D R  S    R +R  R+ +V QDP  SLNP MTIG+ + E  
Sbjct: 355 RLNEPVGGEVIFDGERVDGRSRSEM--RPLRS-RMQIVFQDPFASLNPRMTIGQIIEEGL 411

Query: 117 --RPLADLKSARL-RSMEMLEAVRIRDPERVFRAWPHELSGGMGQRAMIAMMLLPEPEVL 173
               L   K+ RL R  + LEA  +  P  +   +PHE SGG  QR  IA  +  EPE +
Sbjct: 412 IINGLGRTKAERLERVRDALEAAGM--PGNILSRFPHEFSGGQRQRIAIARAVALEPEFI 469

Query: 174 IADEPTSALDVTVRLQVLAILDDLVRKRDMGLIFISHDLNLVRTFSDRVLIMVGGRIVE 232
           + DEPTSALD++V+ Q++ +L  L  +R +  +FISHDL +VR    RV++M GGRIVE
Sbjct: 470 LLDEPTSALDLSVQAQIIDLLRKLQDERGLSYLFISHDLKVVRALCHRVIVMQGGRIVE 528