Pairwise Alignments

Query, 310 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

Subject, 308 a.a., dipeptide ABC transporter - putative membrane subunit from Pseudomonas putida KT2440

 Score =  237 bits (604), Expect = 3e-67
 Identities = 131/297 (44%), Positives = 177/297 (59%), Gaps = 11/297 (3%)

Query: 22  SDSPASRLQARL---GRFYSGWLVFIRNPLAVIGLAIFLCLVIL-ATFAPWIAPHDPLFG 77
           S SPAS +   L     +   W  F RN  AV+GLA F+CLV+  A FAPW+APHDP   
Sbjct: 8   SVSPASPVDQSLLYPSPYKEFWQAFARNKGAVMGLA-FMCLVVFCALFAPWVAPHDPSEQ 66

Query: 78  TLSERLLPP---SAGHW---LGTDQQGRDIWSRIVFGSRTTLMIIFLVAITAAPVGLLIG 131
                L PP     G W   LGTD+ GRD+ SR++ G+R +L+I     + +   G+L+G
Sbjct: 67  YRDFLLTPPVWLEGGTWQFILGTDELGRDLLSRLIQGARLSLLIGLSSVVMSLIPGILLG 126

Query: 132 TTAGFVGGIVEAALMRLTDAFLAFPKLILALAFAAALGAGLENAVLAIALTAWPPYARIA 191
             AGF   ++  ++MRL D  LA P L+LA+A  A LG GL N V+AIA+ + P Y R+ 
Sbjct: 127 LLAGFFPQLLGPSIMRLMDVMLALPSLLLAVAIVAILGPGLINTVIAIAIVSLPSYVRLT 186

Query: 192 RAETLAVRRTDFVAAARMCGSSPLRILIGQIMPMCIPSLVVRVSLDMAGVILIAAGLGFL 251
           RA  +     D+V AAR+ G+   R++   ++P C+  L+V+ +L  +  IL AA LGFL
Sbjct: 187 RAAVMGELNRDYVTAARLAGAGLPRLMFVTVLPNCMAPLIVQATLSFSSAILDAAALGFL 246

Query: 252 GLGVAPPQPEWGAMVSEGRSQILAQWWVCTYPGIAICIVSLGFNLLGDGLRDVLDPK 308
           GLGV PP PEWG M++  R  I   WWV + PG+ I +  L  NL+GDGLRD LDPK
Sbjct: 247 GLGVQPPTPEWGTMLASARDYIERAWWVVSLPGLTILLSVLAINLMGDGLRDALDPK 303