Pairwise Alignments

Query, 333 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

Subject, 336 a.a., dipeptide ABC transporter, permease component (from data) from Pseudomonas simiae WCS417

 Score =  273 bits (699), Expect = 3e-78
 Identities = 145/331 (43%), Positives = 210/331 (63%), Gaps = 3/331 (0%)

Query: 4   VLRTLLATATTLFGLLFVTFLISRMLPADPVLAVVGDHASQALVDRTRIE-LGLDKPLLV 62
           + R L     T FG+  +TF + RM+P DPV  ++G+      +    +E LGL+KPL  
Sbjct: 5   IARRLGLLIPTFFGITLLTFALIRMIPGDPVEVMMGERRVDPEMHAQAMERLGLNKPLYA 64

Query: 63  QFGLYIGNVLQGDLGQSVRTGEPIASELARVFPATLELATLGTLIGVLAGVPLGILAALR 122
           Q+  Y+G + QGDLG+S+RT   + +E   +FPATLEL+    L   + G+  G++AAL+
Sbjct: 65  QYLDYVGKLAQGDLGESLRTRTSVWTEFTALFPATLELSMAALLFAGILGLLAGVIAALK 124

Query: 123 KDTLIDHLVRFIGLMGYSFPIFWLGLMGLLVFYATLGVLPGPGRLDFGYEDFVTPITGLM 182
           + +L DH V  I L GYS PIFW GL+ ++ F  +LG  P  GR+D  Y+  + P TG M
Sbjct: 125 RGSLFDHGVMGISLAGYSMPIFWWGLILIMFFSVSLGWTPVSGRIDLLYD--IEPRTGFM 182

Query: 183 TIDTLLAGDMDLFRNALAHLILPAGLLGYYSLAYISRMTRSLMLGELRQEYIITARVKGV 242
            IDTLLA + D F +AL HLILPA +LG   LA I+RMTRS ML  LR++YI TA+ KG+
Sbjct: 183 LIDTLLADEPDAFWDALHHLILPAIVLGTIPLAVIARMTRSSMLEVLREDYIRTAKAKGL 242

Query: 243 SETKIVWKHALGNIKVPLITVVALSYAGLLEGSVLTETVFSWRGLGLYITDSIFGQDMPA 302
           S  ++V+ H L N  +P++TVV L    LL G+VLTET+FSW G+G ++ ++I  +D P 
Sbjct: 243 SPARVVFVHGLRNALIPVLTVVGLQVGTLLAGAVLTETIFSWPGIGKWLIEAIGARDYPV 302

Query: 303 VMGGTIVVGVIFIVINMLTDVAYRFLDPRSR 333
           V  G +++  + I++N + D+ Y F +PR R
Sbjct: 303 VQNGILLIACLVILVNFVVDILYGFANPRIR 333