Pairwise Alignments

Query, 333 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

Subject, 334 a.a., Dipeptide ABC transporter, permease protein DppB (TC 3.A.1.5.2) from Variovorax sp. SCN45

 Score =  277 bits (708), Expect = 3e-79
 Identities = 144/331 (43%), Positives = 209/331 (63%), Gaps = 3/331 (0%)

Query: 4   VLRTLLATATTLFGLLFVTFLISRMLPADPVLAVVGDHA-SQALVDRTRIELGLDKPLLV 62
           +L  +     T  G+  + F + R++P DP+  + G+     A     R   G DKP++V
Sbjct: 5   ILTRVSLLVPTFIGMTLLAFFLIRLVPGDPIETMAGERGIDPARHAELRTAYGFDKPVIV 64

Query: 63  QFGLYIGNVLQGDLGQSVRTGEPIASELARVFPATLELATLGTLIGVLAGVPLGILAALR 122
           Q+G+YIG VL GDLG+S+ T + + SE   +FPAT+ELA    L  +L G+P GILAA+R
Sbjct: 65  QYGIYIGRVLHGDLGKSIITQDTVMSEFLALFPATVELAVCAILFALLLGLPAGILAAVR 124

Query: 123 KDTLIDHLVRFIGLMGYSFPIFWLGLMGLLVFYATLGVLPGPGRLDFGYEDFVTPITGLM 182
           ++++ DH V    L GYS PIFW GL+ +L F   LG  P  GR+   Y  ++ P TG +
Sbjct: 125 RNSIFDHGVMATSLTGYSMPIFWWGLLLILFFSVQLGWTPVSGRIAVQY--YIEPETGFL 182

Query: 183 TIDTLLAGDMDLFRNALAHLILPAGLLGYYSLAYISRMTRSLMLGELRQEYIITARVKGV 242
            ID+L AGD   F +AL HLILPA +LG   LA I+RMTRS ML  L ++YI TAR KG+
Sbjct: 183 LIDSLRAGDTGAFWSALHHLILPAVVLGTVPLAVIARMTRSAMLEVLGEDYIRTARAKGL 242

Query: 243 SETKIVWKHALGNIKVPLITVVALSYAGLLEGSVLTETVFSWRGLGLYITDSIFGQDMPA 302
           S  ++V  HAL N  +P++TV+ L    L  G++LTET+FSW G+G ++ ++I  +D P 
Sbjct: 243 SRLRVVGLHALRNALIPVVTVIGLQVGVLFTGAILTETIFSWPGVGKWLIEAIGRRDYPV 302

Query: 303 VMGGTIVVGVIFIVINMLTDVAYRFLDPRSR 333
           + GG +++G I +++N+L DVAY  ++PR R
Sbjct: 303 LQGGMLLLGGIVMLVNLLVDVAYGVINPRIR 333