Pairwise Alignments

Query, 333 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

Subject, 328 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  205 bits (522), Expect = 1e-57
 Identities = 109/326 (33%), Positives = 178/326 (54%), Gaps = 17/326 (5%)

Query: 8   LLATATTLFGLLFVTFLISRMLPADPVLAVVGDHA--SQALVDRTRIELGLDKPLLVQFG 65
           LL     +  ++ + F++    P DPV  + G     S  L+ + R + GLDK L VQ  
Sbjct: 14  LLQALGLVLAVVVLNFVLVHAAPGDPVETIAGASGGMSPELMAQLRTQYGLDKSLPVQLA 73

Query: 66  LYIGNVLQGDLGQSVRTGEPIASELARVFPATLELATLGTLIGVLAGVPLGILAALRKDT 125
           +Y+G V QGDLG S     P+   +    PATL L     L+   AG  LG+L++ + + 
Sbjct: 74  VYLGKVAQGDLGYSYFFNLPVTQMIGERLPATLLLVLSSVLLAFFAGTALGVLSSRKPNG 133

Query: 126 LIDHLVRFIGLMGYSFPIFWLGLMGLLVFYATLGVLPGPGRLDFGYEDFVTPITGLMTID 185
            +   +  + L+G++ P+FWLG+M +++  +   +LP               + G+ +ID
Sbjct: 134 WLSQFITVLSLVGFAAPVFWLGIMLVILLASVFPILP---------------VAGMRSID 178

Query: 186 TLLAGDMDLFRNALAHLILPAGLLGYYSLAYISRMTRSLMLGELRQEYIITARVKGVSET 245
           +  AG      +   HL+LP   L    LA  SR+ RS ML  L  ++I TAR KG+++ 
Sbjct: 179 STGAGGFADMLDVAQHLVLPTLTLSLVYLAQYSRLARSSMLDVLGSDFIRTARAKGLADR 238

Query: 246 KIVWKHALGNIKVPLITVVALSYAGLLEGSVLTETVFSWRGLGLYITDSIFGQDMPAVMG 305
            +++KHAL N  +P++TV+ L +  +L G++L ETVF+W GLG    +S+  +D P ++G
Sbjct: 239 VVLYKHALRNALLPVVTVLGLQFGNVLAGAILVETVFNWPGLGRLAFESVLRRDYPTILG 298

Query: 306 GTIVVGVIFIVINMLTDVAYRFLDPR 331
             +   ++ +V+N LTD+ YRF+DPR
Sbjct: 299 VLLFSSIVVVVMNQLTDLCYRFIDPR 324