Pairwise Alignments

Query, 333 a.a., Binding-protein-dependent transport systems inner membrane component (NCBI) from Rhodospirillum rubrum S1H

Subject, 326 a.a., ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines) from Variovorax sp. SCN45

 Score =  205 bits (521), Expect = 1e-57
 Identities = 114/333 (34%), Positives = 183/333 (54%), Gaps = 21/333 (6%)

Query: 4   VLRTLLATATTLFGLLFVTFLISRMLPADPVLAVVGDHASQALVDRTRIELGLDKPLLVQ 63
           VLR L+     +  + F+ FL+ + +  DPV+ ++G  A    +   R  LGLD+P  VQ
Sbjct: 5   VLRRLIQAVIVMIAVAFIAFLLFQYV-GDPVVFLLGQDAKPDQIRELRAALGLDQPFFVQ 63

Query: 64  FGLYIGNVLQGDLGQSVRTGEPIASELARVFPATLELATLGTLIGVLAGVPLGILAALRK 123
           F  ++ N  QG+ G S+R G  ++  +   FPATLELA +  ++ +  G+P+G+  ALR+
Sbjct: 64  FWHFLVNAAQGEFGLSLRQGAKVSRLIGERFPATLELALVAAVLALFIGIPMGVYTALRR 123

Query: 124 DTLIDHLVRFIGLMGYSFPIFWLGLMGLLVFYATLGVLPGPGR---LDFGYEDFVTPITG 180
            T +      + L+G S P F +G++ +LVF  TLG  P  GR   + FG+       +G
Sbjct: 124 GTFMSQFFMTVSLLGVSLPTFLIGILLILVFAVTLGWFPSFGRGETVKFGWWT-----SG 178

Query: 181 LMTIDTLLAGDMDLFRNALAHLILPAGLLGYYSLAYISRMTRSLMLGELRQEYIITARVK 240
           L ++D               H++LPA  L  + L  I R+ R+ ML  LR +YI  AR +
Sbjct: 179 LFSVD------------GWQHIVLPAVTLAIFQLTLIMRLVRAEMLEVLRTDYIKFARAR 226

Query: 241 GVSETKIVWKHALGNIKVPLITVVALSYAGLLEGSVLTETVFSWRGLGLYITDSIFGQDM 300
           G+S   I + HAL N  VP++T+  L   GL+  +++TE+VF W G+GL    ++   D+
Sbjct: 227 GLSNRAIHFGHALKNTLVPVMTITGLQLGGLIAFAIITESVFQWPGMGLLFIQAVTFADI 286

Query: 301 PAVMGGTIVVGVIFIVINMLTDVAYRFLDPRSR 333
           P +     ++ +IF+VIN++ D+ Y  +DPR R
Sbjct: 287 PVMAAYLCLIALIFVVINLVVDLLYFVVDPRLR 319