Pairwise Alignments

Query, 364 a.a., Twin-arginine translocation pathway signal (NCBI) from Rhodospirillum rubrum S1H

Subject, 360 a.a., TRAP transporter solute receptor, unknown substrate 6 from Variovorax sp. SCN45

 Score =  222 bits (565), Expect = 1e-62
 Identities = 129/355 (36%), Positives = 192/355 (54%), Gaps = 5/355 (1%)

Query: 1   MDRREFLSASAAAATGGLSLDGLSRPALANGAKTLTMVTTWPKDYVGLGESASRLAARVR 60
           MDRR  +  +  A   G+   G++    A  A    + +++P+    +  SA  L+  V+
Sbjct: 1   MDRRSLIKNAGIA---GVLAAGIAPAVHAQTAVRWRLASSFPRSLDTIFGSAEMLSKTVK 57

Query: 61  TMSGGRLSITVYAAGELVPAFEAFEAVANGTADLYHGAETYWESRSSAFNFFCAVPFGLT 120
            +SGG+  I+V+ AGEL+PAF   +A+   T ++   A  Y+  +   F F CAVPFGLT
Sbjct: 58  ALSGGKFEISVHPAGELMPAFGVVDALQGDTLEMAQTAAYYFTGKDPIFAFSCAVPFGLT 117

Query: 121 AIETSAWIHHGGAQALWDALSAPYGIKPMLASATGVQMGGWFNKEIKRVEDFKGLRMRI- 179
           A +T +W  +G  + L DA  A Y  +   A  TG QMGGW+ KEIK V D KGL+MR+ 
Sbjct: 118 ARQTDSWKEYGNGRKLLDAFFAQYNFRTASAGNTGTQMGGWYRKEIKTVADLKGLKMRMG 177

Query: 180 PGLGARILKEVGAVPVALPGSQIHDALRDGAIDAAEWIGPWSDLALDLQKVARYYYYPGF 239
            G+    + ++G V   +P   ++ AL  G +DAAE++GP+ D  L   KVA YYYYPG+
Sbjct: 178 GGVFGEAMAKLGVVSQNMPAGDVYQALEKGTLDAAEFVGPYDDEKLGFNKVAPYYYYPGW 237

Query: 240 HEPGTSLAVGINLGVWRGLSDQERAIIEAACGAEHAFSLAEYNARNGDALHTLVTNHGVQ 299
            E G  L   IN   +  LSD+ +AI++AA        +A+Y+A N  AL  LV     +
Sbjct: 238 WEGGADLEFFINNKAFAKLSDENKAILDAATKVAARDMIAKYDAYNPVALKRLVAAK-TE 296

Query: 300 LRAFPTQVLLELGKTAGRVVRAAAADSPETRRIYDHYTAFRRKALTWAQLSDQAF 354
           L+ FP  V+    K +  V     A SPE ++I+    AF+R  + W + S+  F
Sbjct: 297 LKPFPKAVMDAGFKASMEVFAEHEAKSPEFKKIHQDMRAFQRDQILWNRFSEYPF 351