Pairwise Alignments

Query, 360 a.a., OmpA/MotB (NCBI) from Rhodospirillum rubrum S1H

Subject, 346 a.a., flagellar motor protein MotB from Erwinia tracheiphila SCR3

 Score =  155 bits (393), Expect = 1e-42
 Identities = 111/318 (34%), Positives = 156/318 (49%), Gaps = 66/318 (20%)

Query: 5   PIIIKRIKK-----GGHAHHGGAWKLAYADFVTAMMAFFLLLWLLNSVTEEQLVGISNYF 59
           PII+ R KK     GGH    G+WK+AYADF+TA+MAFF+++WL++  T  Q   I+ YF
Sbjct: 7   PIIVVRKKKHKGNEGGH----GSWKIAYADFMTALMAFFMVMWLISISTPAQRESIAEYF 62

Query: 60  -APTAVSQSPSGAGGVLGGQVLGEGASQSNSSSPAVQLTLPPPTIGAGGQDFSDANEGVD 118
             P  V+        + GG    E  S                 I  GGQD +       
Sbjct: 63  KTPLKVA--------ITGGTRTSESVS----------------VIPGGGQDPTQ------ 92

Query: 119 ASDSDDDAGKGEGKGASAGDLEGLGKLGVEPTDKQLAAAEEKRQQEEFNKTATELRQAIQ 178
                                    K+G       + A +    +   N+   +L Q I+
Sbjct: 93  -------------------------KIGEVHKVVDMDAEKRNMDKIRLNRLREKLDQLIE 127

Query: 179 AVPSLQALSNSLLIDNTPEGLRIQLIDREGLSMFPTGSSALLPHTRDLLALVAKAVADVP 238
           A P L+AL   L+I+   EGLRIQ+ID +   MF TGS+ + P+ RD+L  +A  + ++P
Sbjct: 128 ADPRLKALRQHLIINMVEEGLRIQIIDSQNRPMFKTGSAEVEPYMRDILRAIAPILNNIP 187

Query: 239 NKISISGHTDAPPY-SDPSGYGNWELSADRALASRRVLLANGLKEDRVDRVVGKAETEPL 297
           NKIS++GHTD   Y +   GY NWELS DRA ASRR L+  GL   ++ RV+G A+T  L
Sbjct: 188 NKISLAGHTDDFQYATGDRGYSNWELSTDRANASRRELVIGGLDAGKMLRVLGMADTMKL 247

Query: 298 LADDPKAPSNRRIAITLL 315
                    NRRI++ +L
Sbjct: 248 NNRGANDAVNRRISLLVL 265