Pairwise Alignments

Query, 229 a.a., OmpA/MotB (NCBI) from Rhodospirillum rubrum S1H

Subject, 295 a.a., flagellar motor protein MotD from Pseudomonas simiae WCS417

 Score = 94.7 bits (234), Expect = 2e-24
 Identities = 74/251 (29%), Positives = 119/251 (47%), Gaps = 48/251 (19%)

Query: 9   RHHDAPEHDDTDAWLISFADMSCLLLGFFAMLASISSVDLVQYEKVKA---GIQESIGSR 65
           R  +  EH + + WL+S+AD   LL  FF ++ SISS++  +Y+ +     G+       
Sbjct: 4   RRREPEEHVNHERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQALIGVFNDADRS 63

Query: 66  EVTKPIEELRQQT---------------------GDVIKSLQVE------DVVGLGQ--- 95
               PI E R +T                      D +KS+  +      D++   Q   
Sbjct: 64  LKAIPIGEERPKTVTPAKPLVNDSDETAAGVGGTSDPLKSIADDISAAFGDLISSNQMTV 123

Query: 96  --DQQGLVIEFASSAFYEPGSADIRPT--AIPVLEQVIATLNEPRYQGFQIEIQGHTDDI 151
             ++  + IE  SS  +   SAD  P+  A  ++++V A L         I ++G TD+ 
Sbjct: 124 RGNELWVEIELNSSLLF--ASADALPSDQAFTIIDKVAAILKPFENP---IHVEGFTDNF 178

Query: 152 PINTAQYPSNWELSGARATRVLRFMLDQGVAKERVLAIAYADVAPKVPNRTPEGQAIPLN 211
           PI+TAQYP+NWELS ARA+ ++R +  QG+   R+ ++ Y +  P   N T EG+A    
Sbjct: 179 PISTAQYPTNWELSSARASSIVRMLAMQGINPGRLASVGYGEFQPVANNATAEGRA---- 234

Query: 212 QELNRRIAVRV 222
              NRR+ + V
Sbjct: 235 --KNRRVVLVV 243