Pairwise Alignments

Query, 538 a.a., Type I secretion outer membrane protein, TolC (NCBI) from Rhodospirillum rubrum S1H

Subject, 477 a.a., Outer membrane efflux protein from Pseudomonas putida KT2440

 Score =  144 bits (364), Expect = 6e-39
 Identities = 125/449 (27%), Positives = 196/449 (43%), Gaps = 29/449 (6%)

Query: 53  MIKPVSIAVASLLVAGLGLSSPVMAETFDEALVSAYQA----NPTLQARRALLRAVDEQV 108
           M++ +S+A+A    +   + +  +  T    LVS YQ     N  L A RA   A  E V
Sbjct: 1   MLRKLSLAIAVSCASNGVVWAADVPSTVKTDLVSVYQEAVDNNADLAAARADYGARREVV 60

Query: 109 PQALSDWRPQVSVQGSTFYQQMDYEPGRKNLDNRPATLGVVLQQNIFRGLRTVAQTDQAK 168
           PQA +   P +S        +   +      +    +    L Q IFR  R      QA 
Sbjct: 61  PQARAGLLPNLSAGAEMMNTRTKLDEPSITSNRSGNSWSATLAQPIFRADRWFQL--QAA 118

Query: 169 AQVQSERAL-LRSVEQTVLLNAAQAYFNVIRDQAVLELNINNEQVLRRQLDAANDRFRVG 227
             V  + AL L + EQ ++L  AQ YF V+R Q  L      E   +RQLD +N+RF VG
Sbjct: 119 EAVNEQAALELSATEQNLILQTAQNYFAVLRAQDNLAATKAEEAAFKRQLDQSNERFDVG 178

Query: 228 EITRTDVAQADSRLAGAIADRIQAEGTLESS--------RANYTQVVGHPPENIQPPPPY 279
              +TDV Q+ +    A A+RI AE  ++ +           YT + G     +   P  
Sbjct: 179 LSDKTDVLQSQASYDTARANRIIAERQVQDAFEALVTLTNREYTSIQGV----VHSLPVQ 234

Query: 280 ARLPQTLEDGLNTALSANPDVIAALYVWRQAQAAIRDQRGKLLPTLNAEVSYSFSHNPS- 338
              P   +  + TA   N +++A  Y    A+  +R ++    PTL+A   Y    N S 
Sbjct: 235 VPTPNDAKAWVETAGRQNLNLLATNYAVSAAEETLRQRKAGHAPTLDAVAKYQKGDNDSL 294

Query: 339 ---------ATTEYDTKTFQAGLNLTVPLYQGGAVYSQIRDAKHRAGQRRLQVDEQREAV 389
                         D +    GL L +P+Y GG   SQ+R+A  R  Q   Q +  R  V
Sbjct: 295 GFTNPSQLGVRYSGDVEQTSVGLQLNIPIYSGGLTSSQVREAYQRLSQSEQQRESLRRQV 354

Query: 390 IESLTSAWETLTSARARVSSYKSQIEAAGIALDGVQREAQVGSRTVLDVLDAEQELLTSR 449
           +E+  +    + +   +V + K  I +   AL+  +   QVG+R ++DVLDA+++L TS 
Sbjct: 355 VENTRNLHRAVNTDVEQVQARKQSIISNQSALEATEIGYQVGTRNIVDVLDAQRQLYTSV 414

Query: 450 VNLVRAERDSAISTYEVLAALGAMTAEDL 478
            +   +  D  +    +  A G ++ +DL
Sbjct: 415 RDYNNSRYDYILDNLSLKQAAGTLSPQDL 443