Pairwise Alignments

Query, 266 a.a., exodeoxyribonuclease III xth (NCBI) from Rhodospirillum rubrum S1H

Subject, 270 a.a., exodeoxyribonuclease III / apurinic/apyrimidinic endodeoxyribonuclease VI from Pseudomonas putida KT2440

 Score =  127 bits (319), Expect = 2e-34
 Identities = 90/276 (32%), Positives = 130/276 (47%), Gaps = 20/276 (7%)

Query: 2   VSIATFNVNSVKARLPNLLDWLGTRSPDVALLQEIKCLDEAFPRAEIEALGYRLAVHGQK 61
           + I  FN+N ++AR   L   +    PDV  LQE K  D+ FP A+++ALGY +  HGQK
Sbjct: 1   MKIVCFNINGLRARPHQLAALIEKHQPDVIGLQETKVSDDQFPLADVQALGYHVHYHGQK 60

Query: 62  AYNGVAILSRLPLSEVTARLPGLDGAPAEDDDQARYLEAVV----DGRFRVCCLYLPNGN 117
            + GVA+LSR P   +         A  E+D Q R++             +   Y P G 
Sbjct: 61  GHYGVALLSRQPPLSLHKGF-----ATDEEDAQRRFIWGTFADANGSPITIMNGYFPQGE 115

Query: 118 PVEEDRKFGYKLAWMDRLIVRATHLMRDFPDTPVILGGDFNVCPDDLDV----YDPAGWA 173
             +   KF  K  +   L        R+  D PV++ GD N+ P D D+     +   W 
Sbjct: 116 SRDHPTKFPAKQRFYSDLQALLESQFRN--DQPVLVMGDMNISPQDCDIGIGPDNAKRWL 173

Query: 174 NDALCR--PETRQRFRALVFLGYTDALRALNPG-APLFTFWDYQAGAWQKD--HGLRIDH 228
               C   PE R+    L   G  D+ R L P     F+++DY++  ++ +   GLRID 
Sbjct: 174 KTGKCSFLPEEREWMERLKGWGLVDSFRHLYPDVTDRFSWFDYRSRGFEDEPKRGLRIDL 233

Query: 229 LLLNPAAADRLSAAGVDRATRGHAKSSDHAPSWVTL 264
           ++ +     R+ AAGVD   RG  K SDHAP W+ L
Sbjct: 234 IMASQQLVPRIKAAGVDYELRGMEKPSDHAPIWLEL 269