Pairwise Alignments

Query, 452 a.a., inner-membrane translocator (NCBI) from Rhodospirillum rubrum S1H

Subject, 425 a.a., branched-chain amino acid ABC transporter permease from Pseudomonas simiae WCS417

 Score =  380 bits (977), Expect = e-110
 Identities = 205/412 (49%), Positives = 277/412 (67%), Gaps = 12/412 (2%)

Query: 22  VNVPKLIKESLITAALAAVLFLPFIALHATSSGAGLFIEQRWETWGWSVLTVFIGRIALV 81
           +++ K + ++++   ++ V+F P + +     G    +E         V  V +GR A+ 
Sbjct: 7   IDIKKSVVDTVLAGLISLVVFGPIVGV--VLDGYSFNLEPA--RVALLVAIVMVGRFAMS 62

Query: 82  IWRDNPSNRLHDALLKSV---VMPVGGFFRRNMAFIGLAALVLAIVFPITPFSNRYYVDV 138
           ++   P         +S    V  +   ++  + +I  A +V+AIVFPI  F+N+Y + V
Sbjct: 63  LFLQTPKGVKILQGFESTGSGVHVLAPDYKSRLRWIIPALIVIAIVFPI--FANKYLLTV 120

Query: 139 ATTWMIYIMLGWGLNIVVGLAGLLDLGYVAFYAVGAYSYALLSQTFGWSFWVCLPLAGVF 198
               +IY++LG GLNIVVGLAGLLDLGYVAFYA+GAY  AL  Q  G  FW  LPLA + 
Sbjct: 121 VILGLIYVLLGLGLNIVVGLAGLLDLGYVAFYAIGAYGLALGYQYLGLGFWTVLPLAAIA 180

Query: 199 AAFFGVVLGFPVLRLRGDYLAIVTLGFGEIIRVVLLNWYAVTNGPDGISGIERPSFFGLD 258
           AA  G +LGFPVLR+ GDYLAIVTLGFGEIIR+VL NW + T GP+G+  +  P+F GL+
Sbjct: 181 AALAGCILGFPVLRMHGDYLAIVTLGFGEIIRLVLNNWLSFTGGPNGMP-VPSPTFLGLE 239

Query: 259 FARTAPEGGETFHQFFGISYSPDHRVIFLFYLILALAVLTNIFTG-RIRRLPVGRAWEAL 317
           F + A +GG  FH+FFGI Y+P+ + +F+ Y++L L VL  ++   R+ R+PVGRAWEAL
Sbjct: 240 FGKRAKDGGIPFHEFFGIDYNPNIKFLFI-YIVLFLVVLAVLYIKHRLTRMPVGRAWEAL 298

Query: 318 REDEIACRSLGINPTNVKLSAFALGAMFGGFAGSFFATRQGFISPESFTFMESAVILAIV 377
           REDEIACRS+G+N   VKLSAF +GA   G AG FFA+ QGF++P SFTF ESA+ILAIV
Sbjct: 299 REDEIACRSMGLNHVLVKLSAFTIGASTAGLAGVFFASYQGFVNPSSFTFFESALILAIV 358

Query: 378 VLGGMGSQIGVVIAAFFLVVLPEVFREFDQFRMFFFGAAMVAVMVWRPRGLL 429
           VLGGMGS +GVVIAAF L V PE+ R F ++R+  FG  MV +M+WRPRGL+
Sbjct: 359 VLGGMGSTVGVVIAAFVLTVAPELLRSFSEYRVLLFGVLMVVMMIWRPRGLI 410