Pairwise Alignments

Query, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

Subject, 1168 a.a., transcription-repair coupling factor from Rhizobium sp. OAE497

 Score = 1187 bits (3070), Expect = 0.0
 Identities = 623/1170 (53%), Positives = 804/1170 (68%), Gaps = 23/1170 (1%)

Query: 9    AVGRRIEAAGLPEGFDALVLGELAARPGVPAVLHVARDDVRLARLAETIAFFHPAVEILE 68
            A    +    +P G + L+L ELA R G P V ++  D  R+A L + +AF  P + +L 
Sbjct: 12   AASEPLTIGNVPAGMEPLLLAELA-RAGKP-VAYILSDGQRMADLEQMLAFVAPEIPVLT 69

Query: 69   FPAWDCVPYDRVSPNVEIVARRLETLSRLSEEPTRQPGGRLVLTTASAILQRVPPRQILE 128
             PAWDC+PYDRVSP+ +  ARRL  LS L     ++P   +VL T +A+LQ+V P++++E
Sbjct: 70   LPAWDCLPYDRVSPSADTSARRLAALSGLIAHQ-KKPHAAIVLVTVNAMLQKVAPQEVIE 128

Query: 129  RGVFSARVGGRLDLGKLLDHLARHGYGRSEQVMEPGEYAVRGGIVDIFPPGAPEPLRLDL 188
               FSAR G ++ +  +   L R+G+ R   V E GEYAVRGGI+D+F PG+ EP+RLD 
Sbjct: 129  SLAFSARPGNQVRMDDIAGRLERNGFDRVATVREVGEYAVRGGILDVFVPGSEEPVRLDF 188

Query: 189  FGDELDSLRSFDPVSQRTTGQRDALILRPMSEVVLDKESISRFRSGYRELFGTPSAADAL 248
            FGD L+S+RSFDP SQRTTGQ  +L L PMSEV L  ++ISRFR  Y   FG  +  DAL
Sbjct: 189  FGDTLESIRSFDPASQRTTGQVRSLDLNPMSEVTLTPDTISRFRKNYLSAFGAATRDDAL 248

Query: 249  YEAISAGLPFMGMEHWLPLFHEGMDTLFAYVPDGPVTLDPGLDGALRSRQDQIFEYFEAR 308
            Y A+S G  + GMEHWLPLF+E ++T+F Y+    +  D  +  A   R   + +Y++AR
Sbjct: 249  YLAVSEGRRYAGMEHWLPLFYERLETVFDYLKGFQLVTDHTVREAAEERSKLVLDYYDAR 308

Query: 309  RLMESVGDGAKASEKPGGGMIYHALPPPRMFLEEDEFLRHCAGRPGAAFSAYAAP--DVA 366
                 +  G  +  +   G  Y  + P +++L+   F    AG   A  +    P  +  
Sbjct: 309  -----LSSGQPSKGQMAQGTPYKPVTPGQLYLDSKSF----AGTLDALNAIRMTPFNEHE 359

Query: 367  TEKGVVGDFLGRPGHEFADIRARAGGN-----VFDALRDHAQALRAAGKRVVLTAATMGA 421
             E   V +   R G  +A   A  GGN     VFDA+       RA G +V++TA T G+
Sbjct: 360  GEARRVVNIDARQGERWARSNAEGGGNAERVNVFDAVVKFIADKRAGGAKVLITAWTEGS 419

Query: 422  RERMTGVLREHGLSPIVTAETWAEALERAKKATVVLTLILDRGFETPDLAVISEADVLGD 481
             +R+  VL EHGL  +   E   + +  AK         L+ GFET DL VI E D+LGD
Sbjct: 420  LDRLLQVLNEHGLERVKPIEALKDVVSLAKGEAASAVFSLESGFETGDLIVIGEQDILGD 479

Query: 482  RLSRPVRKKKLGDKFIPDISALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVVYAD 541
            R+ R  +++K    FI +++ L EG +VVH +HGIG++ GL T+ A GAPH CL + YAD
Sbjct: 480  RMVRRSKRRKRAADFISEVAGLDEGSIVVHAEHGIGRFIGLRTIEAAGAPHACLELQYAD 539

Query: 542  NNRLYVPVENIEVLSRYGSEQAGVQLDKLGGVAWQARKAKLKQRIRDMAEQLIGVAAARQ 601
              +L++PVENI++LSRYG E     LDKLGG AWQ RKAKLK+R+ DMA+ LI +AA R 
Sbjct: 540  EAKLFLPVENIDLLSRYGGEGTEAMLDKLGGGAWQMRKAKLKKRLLDMADALIRIAAERL 599

Query: 602  LKVGEVISPPEGLYDEFAARFPYAETDDQLRAIADTLDDLAAGRPMDRLICGDVGFGKTE 661
             +   V++ PEGLYDEFAARFPY ET+DQ  AI     DLAAGRPMDRL+CGDVGFGKTE
Sbjct: 600  TRHAPVLTTPEGLYDEFAARFPYDETEDQDTAIEAVRGDLAAGRPMDRLVCGDVGFGKTE 659

Query: 662  VALRAAFATAMSGRQVAVVVPTTLLARQHHLTFKERFAGLPVRIGQLSRLVTARDTKAVK 721
            VALRAAF  AM+G QVAVVVPTTLL+RQH  TF ERF GLPVR+ Q SRLV ++D    K
Sbjct: 660  VALRAAFVAAMNGVQVAVVVPTTLLSRQHFKTFSERFRGLPVRVQQASRLVGSKDLALTK 719

Query: 722  EEMAAGTLDIVVGTHALLAKTVRFRDLGLLIVDEEQHFGVAHKERLKQMRADVHVLTLTA 781
            +E+A G  DIVVGTHALL   + F +LGLLI+DEEQHFGV HKERLK++++DVHVLTL+A
Sbjct: 720  KEVADGKTDIVVGTHALLGAGINFANLGLLIIDEEQHFGVKHKERLKELKSDVHVLTLSA 779

Query: 782  TPIPRTLQLALTGVREMSIIATPPVDRLAVRTFVLPFDPVVVREAILRERFRGGQCFYVC 841
            TPIPRTLQLA+TGVRE+S+I TPPVDR+AVRTF+ PFD +V+RE ++RE +RGGQ FYVC
Sbjct: 780  TPIPRTLQLAMTGVRELSLITTPPVDRMAVRTFISPFDSLVIRETLMREHYRGGQSFYVC 839

Query: 842  PRLTDIDKVMERLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVESGLD 901
            PRL D++ V   L + VP+++  VAHGQM    LE++M AF +G+YDVL++T IVESGLD
Sbjct: 840  PRLADLEDVHAFLQSDVPELKVAVAHGQMPAGELEDIMNAFYEGRYDVLLSTTIVESGLD 899

Query: 902  IPRANTIIIHRADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKTAAKRLDVMQTL 961
            +P ANT+I+HRADMFGLAQLYQLRGRVGR++ R +A  TLP  + ++ TA +RL V+Q+L
Sbjct: 900  VPTANTLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKVLTATAERRLKVLQSL 959

Query: 962  DTLGAGFTLASHDLDIRGAGNLLGDEQSGHIKEVGIELYQQLLEEAVAAAREGPGVEE-A 1020
            DTLGAGF LASHDLDIRGAGNLLG+EQSGHIKEVG ELYQQ+LEEAVA   E  GV+E A
Sbjct: 960  DTLGAGFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVA---EVKGVDEIA 1016

Query: 1021 SGAWSPQIQLGTPILIPDSYVKDLGLRLGLYRRIAGVTDEAEIDEMAAEMVDRFGPLPDE 1080
               WSPQI +GTP++IPD+YV DL LR+ LYRR+  +T+  EID   AEM+DRFGP+P E
Sbjct: 1017 DTGWSPQISVGTPVMIPDNYVPDLHLRMALYRRLGEITELKEIDGFGAEMIDRFGPMPIE 1076

Query: 1081 VENLLKVVTIKVLCRRANAEKVDAGPKGAVLSFRDNLFPNPGGLVRFIGQNVATVKLRPD 1140
            V++LLK+V +K LCR AN EK+DAGPKG V+ FR+  FPNP  LV +IG+  A  K+RPD
Sbjct: 1077 VQHLLKIVYVKSLCRIANVEKLDAGPKGIVVQFRNKEFPNPANLVGYIGKQGAMAKIRPD 1136

Query: 1141 HKLVYRRDWEVARERIQGLGKLMRTLADIA 1170
            H L   RD     +R+QG   +M  LA++A
Sbjct: 1137 HSLFLTRDLPTPEKRLQGAAVIMTQLAELA 1166