Pairwise Alignments

Query, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

Subject, 1143 a.a., transcription-repair coupling factor from Ralstonia solanacearum PSI07

 Score =  731 bits (1886), Expect = 0.0
 Identities = 448/1125 (39%), Positives = 638/1125 (56%), Gaps = 59/1125 (5%)

Query: 11   GRRIEAAGLPEGFDALVLGELAA--RPGVPAVLHVARDDVRLARLAETIAFFHPAVEILE 68
            G+R   +GL    DAL+L       R  VP +  V  + V   RLAE + +F P   +  
Sbjct: 15   GQRFVFSGLQGSADALLLARYLEQHRGTVPMLAVVCANAVDAQRLAEELRWFAPQARVKL 74

Query: 69   FPAWDCVPYDRVSPNVEIVARRLETLSRLSEEPTRQPGGR--LVLTTASAILQRVPPRQI 126
             P W+ +PYD  SP+ ++++ RL TL  L        GG   ++L  AS  LQR+ P   
Sbjct: 75   LPDWETLPYDNFSPHQDLISERLATLHDLQ-------GGACDILLVPASTALQRIAPPSF 127

Query: 127  LERGVFSARVGGRLDLGKLLDHLARHGYGRSEQVMEPGEYAVRGGIVDIFPPGAPEPLRL 186
            L    F  + G RLD   L       GY     VM PGEY+VRGG++D+FP G+P P RL
Sbjct: 128  LAAYTFFFKKGERLDEAALKAQFTLAGYEHVSAVMRPGEYSVRGGLIDLFPMGSPMPYRL 187

Query: 187  DLFGDELDSLRSFDPVSQRTTGQRDALILRPMSEVVLDKESISRFRSGYRELF-GTPSAA 245
            DLFGDE+D++R+FDP +QR+    + + L P  E  +D+ + + FR  +RE+F G P+ A
Sbjct: 188  DLFGDEIDTIRAFDPDTQRSLYPVNEVRLLPGREFPMDEAARTAFRGRWREVFEGDPTRA 247

Query: 246  DALYEAISAGLPFMGMEHWLPLFHEGMDTLFAYVPDGP-VTLDPGLDGALRSRQDQIFEY 304
              +Y+ I  G+P  G+E++LPLF E   TLF Y+P G  + L   ++GA+R       + 
Sbjct: 248  P-IYKDIGNGVPSAGIEYYLPLFFETTATLFDYLPAGVHLALVGDIEGAVRRFWADTTQR 306

Query: 305  FEARRLMESVGDGAKASEKPGGGMIYHALPPPRMFLEEDEFLRHCAGRPGAAFSAYAAPD 364
            +   R            ++P        L P  ++L+E+ F    A +P A     A P 
Sbjct: 307  YNFMR---------HDRDRP-------LLAPSALYLDEEAFF--IAAKPHARLVLRAEPG 348

Query: 365  VATEKGVVGDFLGRPGHEFADIRARAGGNVFDALRDHAQALRAAGKRVVLTAATMGARER 424
             A         L  P    A +  RA     D L +    L     RV++ A + G RE 
Sbjct: 349  DAP--------LSLPLPNVA-VNRRAE----DPLVNLESFLMHGNYRVMICAESAGRRET 395

Query: 425  MTGVLREHGLSPIVTAETWAEALERAKKATVVLTLILDRGFETPD--LAVISEADVLGDR 482
            +  +L   GL P     T    L       V+    L +GF   D  +A I+E ++    
Sbjct: 396  LAQMLAASGLHP--EGVTDCADLVGGDARFVLGVAPLYQGFILGDERIAFITETELYAQA 453

Query: 483  LSRPVRKKK----LGDKFIPDISALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVV 538
            + R  R+K+      D  + D++ L  GD VVH +HGIG+Y+GL ++  G    + L + 
Sbjct: 454  VRRGGRRKQEQASAVDAMVRDLAELKIGDPVVHSEHGIGRYQGLVSIDMGHGEEEFLHLD 513

Query: 539  YADNNRLYVPVENIEVLSRY-GSEQAGVQLDKLGGVAWQARKAKLKQRIRDMAEQLIGVA 597
            Y   ++LYVPV  + V+SRY G++     L +LG   W+  K +  Q+IRD A +L+ + 
Sbjct: 514  YDKGSKLYVPVHQLHVISRYSGADPDTAPLHQLGSGQWEKAKRRAAQQIRDTAAELLNLY 573

Query: 598  AARQLKVGEVISPPEGLYDEFAARFPYAETDDQLRAIADTLDDLAAGRPMDRLICGDVGF 657
            A R L+ G         Y+ FA  F + ET DQ  AIA  + D+ +G+PMDRL+CGDVGF
Sbjct: 574  ARRALRQGFAFPLTPNDYEAFAESFGFDETPDQAAAIAAVIADMTSGKPMDRLVCGDVGF 633

Query: 658  GKTEVALRAAFATAMSGRQVAVVVPTTLLARQHHLTFKERFAGLPVRIGQLSRLVTARDT 717
            GKTEVALRAAF   M G+QVA++ PTTLLA QH+ T  +RFA  PVRI ++SR    ++ 
Sbjct: 634  GKTEVALRAAFVAVMGGKQVAMLAPTTLLAEQHYQTLADRFADWPVRIAEISRFKNKKEI 693

Query: 718  KAVKEEMAAGTLDIVVGTHALLAKTVRFRDLGLLIVDEEQHFGVAHKERLKQMRADVHVL 777
             A  E + AGT+DIV+GTH LL+  V+F  LGL+I+DEE  FGV  KE LK +RA+V VL
Sbjct: 694  DAAVEAINAGTIDIVIGTHKLLSPDVKFDRLGLVIIDEEHRFGVRQKEALKTLRAEVDVL 753

Query: 778  TLTATPIPRTLQLALTGVREMSIIATPPVDRLAVRTFVLPFDPVVVREAILRERFRGGQC 837
            TLTATPIPRTL +AL G+R+ S+IAT P  RLA++TFV   +  V+REAILRE  RGGQ 
Sbjct: 754  TLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDGVLREAILRELKRGGQV 813

Query: 838  FYVCPRLTDIDKVMERLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVE 897
            +++   +  I+    +L  LVP+ R  VAHGQM    LE VM  F   + ++L+ T I+E
Sbjct: 814  YFLHNEVETIENKRAKLEALVPEARVAVAHGQMHERELERVMRDFVAQRANILLCTTIIE 873

Query: 898  SGLDIPRANTIIIHRADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKTAAKRLDV 957
            +G+D+P ANTI+IHR+D FGLAQL+QLRGRVGR+  + YAYL +     ++K A +RL+ 
Sbjct: 874  TGIDVPTANTILIHRSDKFGLAQLHQLRGRVGRSHHQAYAYLLVHDADGLTKQAQRRLEA 933

Query: 958  MQTLDTLGAGFTLASHDLDIRGAGNLLGDEQSGHIKEVGIELYQQLLEEAVAAAREGPGV 1017
            +Q ++ LG+GF LA HDL+IRGAG +LGD+QSG I E+G +LY  +L +AV + + G   
Sbjct: 934  IQQMEELGSGFYLAMHDLEIRGAGEVLGDKQSGEISEIGFQLYTDMLNQAVKSLKAGKEP 993

Query: 1018 E-EASGAWSPQIQLGTPILIPDSYVKDLGLRLGLYRRIAGVTDEAEIDEMAAEMVDRFGP 1076
            +  A  A + +I LGTP L+P  Y  D+  RL LY+R+A       ID +  E++DRFG 
Sbjct: 994  DLMAPLAATTEINLGTPALLPSDYCGDVQERLSLYKRLANCESGETIDNIQEELIDRFGK 1053

Query: 1077 LPDEVENLLKVVTIKVLCRRANAEKVDAGPKGAVLSFRDNLFPNP 1121
            LP + ++L++   +++  +     K+D       L F     PNP
Sbjct: 1054 LPPQAQSLIETHRLRIAAQPLGIRKIDTSADAVTLQF----VPNP 1094