Pairwise Alignments

Query, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

 Score =  781 bits (2017), Expect = 0.0
 Identities = 460/1121 (41%), Positives = 667/1121 (59%), Gaps = 46/1121 (4%)

Query: 19   LPEGFDALVLGELAARPGVPAVLHVARDDVRLARLAETIAFFHPAVEILEFPAWDCVPYD 78
            LP    +L + E A+  G   +L  A D     RL + + FF P + +L FP W+ +PYD
Sbjct: 21   LPGAALSLAIAEAASSAGRFTLLLTA-DSQAADRLEQELRFFAPDLPVLPFPDWETLPYD 79

Query: 79   RVSPNVEIVARRLETLSRLSEEPTRQPGGRLVLTTASAILQRVPPRQILERGVFSARVGG 138
              SP+ +I+++R+ +L RL E       G LV+   +A L R+ P + L        VG 
Sbjct: 80   LFSPHQDIISQRIASLYRLPE----LSHGILVVPITTA-LHRLAPTRFLLGSSLVLDVGQ 134

Query: 139  RLDLGKLLDHLARHGYGRSEQVMEPGEYAVRGGIVDIFPPGAPEPLRLDLFGDELDSLRS 198
             +D+ ++   L   GY   + V E GE+AVRG ++D+FP G+  P R+DLF +E+++LR+
Sbjct: 135  TIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDNEIETLRT 194

Query: 199  FDPVSQRTTGQRDALILRPMSEVVLDKESISRFRSGYRELFGTPSAADALYEAISAGLPF 258
            FDP +QR+  + D++ L P  E  + KE ++RF++ +RE F       A+++ +++G+  
Sbjct: 195  FDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQDLASGIIP 254

Query: 259  MGMEHWLPLFHEGMDTLFAYVP-DGPVTLDPGLDGALRSRQDQIFEYFEARRLMESVGDG 317
             G+E++LPLF E   TLF Y+P D  V   PG++ A     + +   +E RR        
Sbjct: 255  AGIEYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWNDVRGRYEDRR-------- 306

Query: 318  AKASEKPGGGMIYHALPPPRMFLE-EDEFLRHCAGRPGAAFSAYAAPDVATEKGVVGDFL 376
                    G +    LPP  +FL  ED F R          S    P V  E+       
Sbjct: 307  --------GDLSRPLLPPAELFLPVEDCFARLKQWPRVVVSSEELEPGVGRERF------ 352

Query: 377  GRPGHEFADIRARAGGNVFDALRDHAQALRAAGKRVVLTAATMGARERMTGVLREHGLSP 436
              P     ++   A  N    L + A  L     RV+ TA + G RE +  +L    L P
Sbjct: 353  --PARALPNLAIEAKAN--QPLAELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRP 408

Query: 437  IVTAETWAEALERAKKATVVLTLILDRGF--ETPDLAVISEADVLGDRLSRPVRKKKLG- 493
              T E W + +  A++  + +   LD G   + P LA+I+E+ + G R+ +  R+ K G 
Sbjct: 409  H-TVEGWDDFITGAERLAITIAP-LDDGLLLDDPGLALIAESPLFGQRVMQRRRRDKRGE 466

Query: 494  ---DKFIPDISALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVVYADNNRLYVPVE 550
               D  I +++ L EG  VVH+DHG+G+Y GL TL   G   + L + YA+N +LYVPV 
Sbjct: 467  TANDAVIKNLTELREGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVA 526

Query: 551  NIEVLSRY-GSEQAGVQLDKLGGVAWQARKAKLKQRIRDMAEQLIGVAAARQLKVGEVIS 609
            N+ +++RY GS+ A   L +LG  AWQ  K K  +++RD+A +L+ + A R  + G   +
Sbjct: 527  NLHLIARYTGSDDALAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFA 586

Query: 610  PPEGLYDEFAARFPYAETDDQLRAIADTLDDLAAGRPMDRLICGDVGFGKTEVALRAAFA 669
             P   Y  F+A FP+ ET DQ  AI     D+ A +PMDRL+CGDVGFGKTEVA+RAAF 
Sbjct: 587  DPSADYATFSAGFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFI 646

Query: 670  TAMSGRQVAVVVPTTLLARQHHLTFKERFAGLPVRIGQLSRLVTARDTKAVKEEMAAGTL 729
               SGRQVAV+VPTTLLA+QH+ +F++RFA  PV +  +SR  +A++  A   ++A G +
Sbjct: 647  AVHSGRQVAVLVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKI 706

Query: 730  DIVVGTHALLAKTVRFRDLGLLIVDEEQHFGVAHKERLKQMRADVHVLTLTATPIPRTLQ 789
            DI++GTH LL   VRF+DLGL I+DEE  FGV  KE+LK +R++V +LTLTATPIPRTL 
Sbjct: 707  DILIGTHKLLQDDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLN 766

Query: 790  LALTGVREMSIIATPPVDRLAVRTFVLPFDPVVVREAILRERFRGGQCFYVCPRLTDIDK 849
            +A+ G+R++SIIATPP  RL+VRTFV+  +   V+EA+LRE  RGGQ +Y+   +  I+K
Sbjct: 767  MAVAGMRDLSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEK 826

Query: 850  VMERLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVESGLDIPRANTII 909
                L  LVP+ R  + HGQM    LE+VM+ F   +++VLVA+ I+E+G+D+P ANTI+
Sbjct: 827  CAADLAELVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIV 886

Query: 910  IHRADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKTAAKRLDVMQTLDTLGAGFT 969
            I RAD FGLAQL+QLRGRVGR+  + YAYL  P  + VS  A KRL+ +     LGAGF 
Sbjct: 887  IERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFV 946

Query: 970  LASHDLDIRGAGNLLGDEQSGHIKEVGIELYQQLLEEAVAAAREG--PGVEEASGAWSPQ 1027
            LA++DL+IRGAG LLG+ QSG I+ VG  LY ++LE AV A R+G  P +E+  G   P+
Sbjct: 947  LATNDLEIRGAGELLGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGG-GPE 1005

Query: 1028 IQLGTPILIPDSYVKDLGLRLGLYRRIAGVTDEAEIDEMAAEMVDRFGPLPDEVENLLKV 1087
            I L  P LIP+ Y+ D+  RL LY+RIA   DE  + ++  EM+DRFG LP+  +NL+++
Sbjct: 1006 INLRLPALIPEDYLPDVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRL 1065

Query: 1088 VTIKVLCRRANAEKVDAGPKGAVLSFRDNLFPNPGGLVRFI 1128
             ++K+   +   +KVDAGP G  L F      +P  L++ I
Sbjct: 1066 TSLKLHAEKLGIKKVDAGPNGGKLEFEAETPVDPLTLIKLI 1106