Pairwise Alignments

Query, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

Subject, 1146 a.a., transcription-repair coupling factor from Pseudomonas sp. S08-1

 Score =  787 bits (2033), Expect = 0.0
 Identities = 467/1157 (40%), Positives = 686/1157 (59%), Gaps = 43/1157 (3%)

Query: 19   LPEGFDALVLGELAARPGVPAVLHVARDDVRLARLAETIAFFHPAVEILEFPAWDCVPYD 78
            LP    +L + E AA       L +  D     RL E +AFF P + +L FP W+ +PYD
Sbjct: 21   LPGAALSLAVAE-AASAAKRFTLLLTADSQSAERLQEELAFFAPDLPVLHFPDWETLPYD 79

Query: 79   RVSPNVEIVARRLETLSRLSEEPTRQPGGRLVLTTASAILQRVPPRQILERGVFSARVGG 138
              SP+ +I+++R+ TL RL E       G LV+  A+A+ +  P R +L  G+    VG 
Sbjct: 80   VFSPHQDIISQRIATLYRLPEIKH----GVLVVPIATALHRLAPTRFLLGSGLL-LDVGQ 134

Query: 139  RLDLGKLLDHLARHGYGRSEQVMEPGEYAVRGGIVDIFPPGAPEPLRLDLFGDELDSLRS 198
            +LD+ ++   L   GY   + V E GE+AVRG ++D+FP G+  P R+DLF DE+++LR+
Sbjct: 135  KLDVEEMRARLEAAGYRCVDTVYEHGEFAVRGALIDLFPMGSDTPYRIDLFDDEIETLRT 194

Query: 199  FDPVSQRTTGQRDALILRPMSEVVLDKESISRFRSGYRELFGTPSAADALYEAISAGLPF 258
            FDP +QR+  + +++ L P  E  L+K++++ FR  +RE F        +Y+ +++G+  
Sbjct: 195  FDPETQRSVDKVESIRLLPAREFPLEKKAVTDFRGRFRERFDVDFRRCPIYQDLASGITP 254

Query: 259  MGMEHWLPLFHEGMDTLFAYVP-DGPVTLDPGLDGALRSRQDQIFEYFEARRLMESVGDG 317
             G+E++LPLF E   TLF Y+P D  V   PG++ A           +E RR+       
Sbjct: 255  AGIEYYLPLFFEETGTLFDYLPGDTQVFSLPGIEQAAEQFWLDARNRYEDRRV------- 307

Query: 318  AKASEKPGGGMIYHALPPPRMFLEEDEFLRHCAGRPGAAFSAYAAPDVATEKGVVGD-FL 376
                E+P        LPP  +FL  ++        P    S     DV  E GV  + F 
Sbjct: 308  --DPERP-------LLPPADIFLPVEDCFARLKNWPRVVVSQ---EDV--EVGVGRERFD 353

Query: 377  GRPGHEFADIRARAGGNVFDALRDHAQALRAAGKRVVLTAATMGARERMTGVLREHGLSP 436
             RP  + A I+A+A     + L    + +     RV+ +A + G RE +  +L    L P
Sbjct: 354  ARPLPDLA-IQAKAS----EPLAALRRFIEEYPGRVLFSAESAGRREVLLELLARLKLKP 408

Query: 437  IVTAETWAEALERAKKATVVLTLILDRGFETPDLAVISEADVLGDRLSRPVRKKKL---G 493
            I  A  W E  +  ++  + +   LD G     +A+++E+ + G R+ +  R++K    G
Sbjct: 409  IEVAG-WKEFTDSRERLAICIAP-LDEGLLLDQIALVAESPLFGQRVMQRRRREKSRDGG 466

Query: 494  DKFIPDISALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVVYADNNRLYVPVENIE 553
            D  I +++ L EG  VVH+DHG+G+Y GL T+   G   + L ++YA+  +LYVPV ++ 
Sbjct: 467  DNVIKNLTELREGAPVVHIDHGVGRYLGLVTMEFDGQAAEFLALMYAEEAKLYVPVASLH 526

Query: 554  VLSRY-GSEQAGVQLDKLGGVAWQARKAKLKQRIRDMAEQLIGVAAARQLKVGEVISPPE 612
            +++RY GS+ A   L +LG   WQ  K K  +++RD+A +L+ + A R  + G     P 
Sbjct: 527  LIARYTGSDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFKDPA 586

Query: 613  GLYDEFAARFPYAETDDQLRAIADTLDDLAAGRPMDRLICGDVGFGKTEVALRAAFATAM 672
              Y  F+A FP+ ET DQ  AI    +D+ A +PMDRL+CGDVGFGKTEVA+RAAF    
Sbjct: 587  ADYATFSAGFPFEETPDQQAAIDAVREDMLAAKPMDRLVCGDVGFGKTEVAMRAAFIAVH 646

Query: 673  SGRQVAVVVPTTLLARQHHLTFKERFAGLPVRIGQLSRLVTARDTKAVKEEMAAGTLDIV 732
            SGRQVAV+VPTTLLA+QH+ +F++RFA  PV +  +SR  +A++      ++A G +DIV
Sbjct: 647  SGRQVAVLVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNEAVAKLAEGKIDIV 706

Query: 733  VGTHALLAKTVRFRDLGLLIVDEEQHFGVAHKERLKQMRADVHVLTLTATPIPRTLQLAL 792
            +GTH LL   VRF+DLGL I+DEE  FGV  KE+LK +R++V +LTLTATPIPRTL +A+
Sbjct: 707  IGTHKLLQDDVRFKDLGLCIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAV 766

Query: 793  TGVREMSIIATPPVDRLAVRTFVLPFDPVVVREAILRERFRGGQCFYVCPRLTDIDKVME 852
            +G+R++SIIATPP  RL+VRTFV+     V++EA+LRE  RGGQ +Y+   +  I+K   
Sbjct: 767  SGMRDLSIIATPPARRLSVRTFVMEQHDSVIKEALLRELLRGGQVYYLHNDVKTIEKCAA 826

Query: 853  RLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVESGLDIPRANTIIIHR 912
             L  LVP+ R  + HGQM    LE VM+ F   +++VLVA+ I+E+G+D+P ANTI+I R
Sbjct: 827  DLAALVPEARIGIGHGQMHERDLERVMSDFYHKRFNVLVASTIIETGIDVPSANTILIER 886

Query: 913  ADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKTAAKRLDVMQTLDTLGAGFTLAS 972
            AD FGLAQL+QLRGRVGR+  + YAYL  PP + +++ A KRL+ +     LGAGF LA+
Sbjct: 887  ADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQMTEDAQKRLEAIANAQDLGAGFVLAT 946

Query: 973  HDLDIRGAGNLLGDEQSGHIKEVGIELYQQLLEEAVAAAREG--PGVEEASGAWSPQIQL 1030
            HDL+IRGAG LLGD QSG I+ VG  LY ++LE AV A R+G  P +E+  G   P++ L
Sbjct: 947  HDLEIRGAGELLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLEQPLGG-GPEVNL 1005

Query: 1031 GTPILIPDSYVKDLGLRLGLYRRIAGVTDEAEIDEMAAEMVDRFGPLPDEVENLLKVVTI 1090
              P LIPD Y+ D+  RL LY+RIA   DE  + E+  EM+DRFG LP+  +NL+++  +
Sbjct: 1006 RVPALIPDDYLPDVHSRLILYKRIASAADEDGLKELQVEMIDRFGLLPEATKNLMRLTLL 1065

Query: 1091 KVLCRRANAEKVDAGPKGAVLSFRDNLFPNPGGLVRFIGQNVATVKLRPDHKLVYRRDWE 1150
            K+   +   +K+DAGP+G  + F  +   +P  L++ I    A  K     +   +   E
Sbjct: 1066 KLQAEKLGIKKIDAGPQGGRIEFAGDTSVDPLVLIKLIQSAPARYKFEGATQFKLQVPME 1125

Query: 1151 VARERIQGLGKLMRTLA 1167
               ER   L  L+  LA
Sbjct: 1126 RPEERFNTLEALLERLA 1142