Pairwise Alignments

Query, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

Subject, 1149 a.a., Transcription-repair-coupling factor from Pseudomonas sp. RS175

 Score =  767 bits (1981), Expect = 0.0
 Identities = 448/1121 (39%), Positives = 672/1121 (59%), Gaps = 46/1121 (4%)

Query: 19   LPEGFDALVLGELAARPGVPAVLHVARDDVRLARLAETIAFFHPAVEILEFPAWDCVPYD 78
            LP    +L + E AA       L +  D     RL + ++FF P + +L FP W+ +PYD
Sbjct: 21   LPGAALSLAIAE-AASAAKRFTLLLTADSQSAERLEQELSFFAPDLPVLHFPDWETLPYD 79

Query: 79   RVSPNVEIVARRLETLSRLSEEPTRQPGGRLVLTTASAILQRVPPRQILERGVFSARVGG 138
              SP+ +I+++R+ +L RL E       G LV+   +A L R+ P Q L        +G 
Sbjct: 80   LFSPHQDIISQRIASLYRLPE----LSHGVLVVPITTA-LHRLAPTQFLLGSSLVLDIGQ 134

Query: 139  RLDLGKLLDHLARHGYGRSEQVMEPGEYAVRGGIVDIFPPGAPEPLRLDLFGDELDSLRS 198
            +LD+ ++   L   GY   + V E GE+AVRG ++D+FP G+  P R+DLF DE+++LR+
Sbjct: 135  KLDVEQMRSRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDDEIETLRT 194

Query: 199  FDPVSQRTTGQRDALILRPMSEVVLDKESISRFRSGYRELFGTPSAADALYEAISAGLPF 258
            FDP +QR+  +  ++ L P  E  L KE+++RF++ +RE F        +++ +S+G+  
Sbjct: 195  FDPENQRSIDKVQSVRLLPAKEFPLQKEAVTRFKARFRERFDVDFRRCPIFQDLSSGITP 254

Query: 259  MGMEHWLPLFHEGMDTLFAYVP-DGPVTLDPGLDGALRSRQDQIFEYFEARRLMESVGDG 317
             G+E++LPLF E   TLF Y+P D  V   PG++ A  +  + +   +E RR+     D 
Sbjct: 255  AGIEYYLPLFFEDTSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRYEERRV-----DP 309

Query: 318  AKASEKPGGGMIYHALPPPRMFLE-EDEFLRHCAGRPGAAFSAYAAPDVATEKGVVGDFL 376
            A+             LPP  +FL  ED F R  +     A      P V  E+     F 
Sbjct: 310  ARP-----------LLPPAELFLPVEDCFARLKSWPRVVASQQDVEPGVGRER-----FP 353

Query: 377  GRPGHEFADIRARAGGNVFDALRDHAQALRAAGKRVVLTAATMGARERMTGVLREHGLSP 436
             +P  + A I A+A   ++      A  L     RV+ TA + G RE +  +L    L P
Sbjct: 354  AKPLPDLA-IEAKATQPLWAL----AGFLDEFPGRVLFTAESAGRREVLLELLERLKLRP 408

Query: 437  IVTAETWAEALERAKKATVVLTLILDRGF--ETPDLAVISEADVLGDRLSRPVRKKKLGD 494
              T ++W + +    +  + +   LD G   + P LA+++E+ + G R+ +  R++K  D
Sbjct: 409  -KTVDSWPDFVAGTDRLAITIAP-LDEGLVLDDPALALVAESPLFGQRVMQRRRREKRAD 466

Query: 495  K----FIPDISALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVVYADNNRLYVPVE 550
                  I +++ L EG  VVH+DHG+G+Y GL TL       + L + YA+  +LYVPV 
Sbjct: 467  ASNEAVIKNLTELREGAPVVHIDHGVGRYLGLATLEVDNQTAEFLTLEYAEGAKLYVPVA 526

Query: 551  NIEVLSRY-GSEQAGVQLDKLGGVAWQARKAKLKQRIRDMAEQLIGVAAARQLKVGEVIS 609
            N+ +++RY GS+ A   L +LG   WQ  K K  +++RD+A +L+ + A R  + G   +
Sbjct: 527  NLHLIARYTGSDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGFAFT 586

Query: 610  PPEGLYDEFAARFPYAETDDQLRAIADTLDDLAAGRPMDRLICGDVGFGKTEVALRAAFA 669
             P+  Y+ F+A FP+ ET DQ   I     D+ A +PMDRL+CGDVGFGKTEVA+RAAF 
Sbjct: 587  DPKVDYETFSAGFPFEETVDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFI 646

Query: 670  TAMSGRQVAVVVPTTLLARQHHLTFKERFAGLPVRIGQLSRLVTARDTKAVKEEMAAGTL 729
               SG+QVA++VPTTLLA+QH+ +F++RFA  PV +  +SR  +A++  A  +++A G +
Sbjct: 647  AVHSGKQVAILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAVKDLAEGKI 706

Query: 730  DIVVGTHALLAKTVRFRDLGLLIVDEEQHFGVAHKERLKQMRADVHVLTLTATPIPRTLQ 789
            DIV+GTH LL   V+ ++LGL+I+DEE  FGV  KE+LK +R++V +LTLTATPIPRTL 
Sbjct: 707  DIVIGTHKLLQDDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLN 766

Query: 790  LALTGVREMSIIATPPVDRLAVRTFVLPFDPVVVREAILRERFRGGQCFYVCPRLTDIDK 849
            +A++G+R++SIIATPP  RL+VRTFV+  +   V+EA+LRE  RGGQ +Y+   +  I+K
Sbjct: 767  MAVSGMRDLSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEK 826

Query: 850  VMERLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVESGLDIPRANTII 909
                L  LVP+ R  + HGQM    LE+VM+ F   +++VL+A+ I+E+G+D+P ANTII
Sbjct: 827  CAADLAELVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTII 886

Query: 910  IHRADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKTAAKRLDVMQTLDTLGAGFT 969
            I RAD FGLAQL+QLRGRVGR+  + YAYL  PP + ++  A KRL+ +     LGAGF 
Sbjct: 887  IERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITPDAEKRLEAIANTQDLGAGFV 946

Query: 970  LASHDLDIRGAGNLLGDEQSGHIKEVGIELYQQLLEEAVAAAREG--PGVEEASGAWSPQ 1027
            LA++DL+IRGAG LLGD QSG I+ VG  LY ++LE AV + R+G  P +++  G   P+
Sbjct: 947  LATNDLEIRGAGELLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPLGG-GPE 1005

Query: 1028 IQLGTPILIPDSYVKDLGLRLGLYRRIAGVTDEAEIDEMAAEMVDRFGPLPDEVENLLKV 1087
            I L  P LIP+ Y+ D+  RL LY+RIA  +DE  + ++  EM+DRFG LP+  +NL++ 
Sbjct: 1006 INLRVPALIPEDYLPDVHARLILYKRIASASDEEGLKDLQVEMIDRFGLLPEPTKNLVRT 1065

Query: 1088 VTIKVLCRRANAEKVDAGPKGAVLSFRDNLFPNPGGLVRFI 1128
              +K+   +   +KVD GP G  + F      +P  L++ I
Sbjct: 1066 TLLKLKAEQLGIKKVDGGPNGGRIEFEAQTPVDPLVLIKLI 1106