Pairwise Alignments

Query, 1177 a.a., Transcription-repair coupling factor (NCBI) from Rhodospirillum rubrum S1H

Subject, 1135 a.a., Transcription-repair-coupling factor from Methylophilus sp. DMC18

 Score =  714 bits (1842), Expect = 0.0
 Identities = 432/1126 (38%), Positives = 634/1126 (56%), Gaps = 65/1126 (5%)

Query: 21   EGFDALVLGELAA---RPGVPAVLHVARDDVRLARLAETIAFFHPAVEILEFPAWDCVPY 77
            +G D+  L ELA        P V+  A       RL + I FF   + I   P W+ +PY
Sbjct: 19   QGLDSQALAELACGLKATNTPLVVLTA-SAFEAQRLMDEIPFFGKEIAIHLLPDWETLPY 77

Query: 78   DRVSPNVEIVARRLETLSRLSEEPTRQPGGRLVLTTASAILQRVPPRQILERGVFSARVG 137
            D  SP+ ++++ RL TL +LS+  +      +V+   +  L R+PP   L    F  + G
Sbjct: 78   DVFSPHPDLISERLATLYQLSQNQSN-----VVIVPMATALLRLPPVAYLAAHSFMLKKG 132

Query: 138  GRLDLGKLLDHLARHGYGRSEQVMEPGEYAVRGGIVDIFPPGAPEPLRLDLFGDELDSLR 197
             RLD+  L +  A+ GY    QVM PGE++VRGG+VD+FP G+  P R+DLF DE++++R
Sbjct: 133  QRLDVEALRNQCAQAGYHHVSQVMAPGEFSVRGGLVDLFPMGSAFPYRIDLFDDEIETIR 192

Query: 198  SFDPVSQRTTGQRDALILRPMSEVVLDKESISRFRSGYRELF-GTPSAADALYEAISAGL 256
            +FD  +QR+      + + P  E  +D+ +I+RFRS +RE F G P  A  +Y+ +S G 
Sbjct: 193  TFDIDTQRSVYPVPEIRMLPAREFPMDEAAITRFRSQFREYFEGDPQRAK-IYKDVSKGT 251

Query: 257  PFMGMEHWLPLFHEGMDTLFAYVPDGPVTLDPGLDGALRSRQDQIFEYFEAR-RLMESVG 315
            P  G+E +LPLF E   TLF Y+P   V     L G L       +     R RLM    
Sbjct: 252  PSGGVEWYLPLFFEQTATLFDYLPAQTVLC---LHGDLDKAAQTFWADASTRYRLM---- 304

Query: 316  DGAKASEKPGGGMIYHALPPPRMFLEEDEFLRHCAGRPGAAFSAYAAPDVATEKGVVGDF 375
              A  +EKP        L P  +  + DEF +       A  +   A         V   
Sbjct: 305  --AHDAEKP-------ILRPETLLQKADEFFKRT--HDFALVTQQIAQQTVLPPVDVDRR 353

Query: 376  LGRPGHEFADIRARAGGNVFDALRDHAQALRAAGKRVVLTAATMGARERMTGVLREHGLS 435
              +P H+      +  G                  RV++ A ++G RE +  +  +HGLS
Sbjct: 354  AEQPLHKLQAFIQQFDG------------------RVMIAAESLGRRETIAQLFSDHGLS 395

Query: 436  PIVTAETWAEALERAKKATVVLTL------ILDRGFETPDLAVISEADVLGDRLSRPVR- 488
                AE WA   +      V+L +      ++D+      LAV++EA++    + +  R 
Sbjct: 396  -FSLAEDWAGFAQ--SNFPVMLGVAPLHQGMMDKDVREGALAVVTEAELYASTVRQQRRR 452

Query: 489  ---KKKLGDKFIPDISALSEGDLVVHVDHGIGQYEGLETLTAGGAPHDCLRVVYADNNRL 545
               K +  +  + D+S L   D VVH  HG+G+Y+GL  +  G    + L + Y   ++L
Sbjct: 453  NQEKARNAEGMLKDLSELRLDDPVVHEQHGVGRYKGLVNIDFGEGETELLLIEYFGEDKL 512

Query: 546  YVPVENIEVLSRY-GSEQAGVQLDKLGGVAWQARKAKLKQRIRDMAEQLIGVAAARQLKV 604
            YVPV  + ++SRY G       L +LG   W+  K K  ++IRD A +L+ + A R  + 
Sbjct: 513  YVPVSQLFLISRYSGGPPESAPLHRLGSGQWEKAKKKALKQIRDTAAELLNLYAQRAARK 572

Query: 605  GEVISPPEGLYDEFAARFPYAETDDQLRAIADTLDDLAAGRPMDRLICGDVGFGKTEVAL 664
            G   +     Y+ F   FP+ ET DQL AI   + D+ +GRPMDRL+CGDVGFGKTEVAL
Sbjct: 573  GHAFTLGLHDYEAFCEGFPFEETPDQLDAIEAVIKDMQSGRPMDRLVCGDVGFGKTEVAL 632

Query: 665  RAAFATAMSGRQVAVVVPTTLLARQHHLTFKERFAGLPVRIGQLSRLVTARDTKAVKEEM 724
            RAAF   M GRQVAV+VPTTLLA QH+  F +RFA  P+++ ++SR  TA++     + +
Sbjct: 633  RAAFVAVMGGRQVAVLVPTTLLAEQHYQNFVDRFAEWPIKVAEISRFRTAKEQAEAIKGL 692

Query: 725  AAGTLDIVVGTHALLAKTVRFRDLGLLIVDEEQHFGVAHKERLKQMRADVHVLTLTATPI 784
            A G++DI++GTH L+ K V+F++LGL I+DEE  FGV  KE++K +RA+V VLTLTATPI
Sbjct: 693  ADGSIDIIIGTHRLIQKDVKFKNLGLAILDEEHRFGVRQKEQMKALRAEVDVLTLTATPI 752

Query: 785  PRTLQLALTGVREMSIIATPPVDRLAVRTFVLPFDPVVVREAILRERFRGGQCFYVCPRL 844
            PRTL +A+ G+RE S+I+TPP  RLA++TF  P+   ++REA++RE  RGGQ +++   +
Sbjct: 753  PRTLSMAMEGLREFSVISTPPQKRLAIKTFHTPYSDGIIREAVMREFKRGGQVYFLHNEV 812

Query: 845  TDIDKVMERLTTLVPDIRAVVAHGQMAPSRLEEVMTAFADGQYDVLVATNIVESGLDIPR 904
              I  + E+L  +VP+ R V+ HGQ+    LE VM  F   + ++L+ T IVE+G+D+P 
Sbjct: 813  DTIYVMKEKLEKIVPEARIVIGHGQLRERELEHVMRDFYQQRANLLLCTTIVETGIDVPT 872

Query: 905  ANTIIIHRADMFGLAQLYQLRGRVGRARARGYAYLTLPPGRTVSKTAAKRLDVMQTLDTL 964
            ANT+II++ADMFGLAQL+QLRGRVGR+  + Y YL   P R ++  A KRLD +Q L+ L
Sbjct: 873  ANTMIINKADMFGLAQLHQLRGRVGRSHHQAYTYLLTDPHRNITPQAQKRLDAIQLLEDL 932

Query: 965  GAGFTLASHDLDIRGAGNLLGDEQSGHIKEVGIELYQQLLEEAVAAAREG--PGVEEASG 1022
            GAGF LA HDL+IRGAG LLGD QSG ++E+G  LY  +L  AV   + G  P ++   G
Sbjct: 933  GAGFHLAMHDLEIRGAGELLGDSQSGEMQEIGFNLYSDMLNHAVKQLKAGKEPDLDAPLG 992

Query: 1023 AWSPQIQLGTPILIPDSYVKDLGLRLGLYRRIAGVTDEAEIDEMAAEMVDRFGPLPDEVE 1082
              + +I L TP L+P++Y  D+  RL +Y+R+A   D+  +D M  E++DRFG LP+  E
Sbjct: 993  V-TTEINLHTPALLPNNYCPDVHERLVIYKRLANCEDDDALDAMQEELIDRFGLLPEPGE 1051

Query: 1083 NLLKVVTIKVLCRRANAEKVDAGPKGAVLSFRDNLFPNPGGLVRFI 1128
             L+    +++  +     K+DA      L F      +P  L+  +
Sbjct: 1052 ALIACHRLRIAAKALGIIKIDASDAAIQLQFNVKADLDPLKLINLL 1097