Pairwise Alignments

Query, 500 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 688 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  197 bits (500), Expect = 1e-54
 Identities = 116/253 (45%), Positives = 159/253 (62%), Gaps = 14/253 (5%)

Query: 261 GVKATVETVASSAGKMQNTAQAMAAAAEQTSQQSSIVSTAAEELGTSVSEIARQIAQATR 320
           G++A+ ET++ +A      +  +A+AAE+ S     V+ AAEEL  S+ EI+R++A+   
Sbjct: 435 GLRASTETLSQTATTTTEQSTVVASAAEEASTNVQTVAAAAEELSHSIQEISRRVAETAT 494

Query: 321 VTDDAVAETKASEKLVGELVTAADKIGAVSQLIADIASQTNLLALNATIEAARAGDAGKG 380
            TD AV E +A+   V  L  AA +IG V  +I DIASQTNLLALNATIEAARAGDAGKG
Sbjct: 495 ATDGAVREAEATNATVRGLAEAARRIGDVVNMITDIASQTNLLALNATIEAARAGDAGKG 554

Query: 381 FAVVASEVKSLANQTAKATEEIEQQVSGIQDSSRATASAIRQIGLVIAQVSEISASISGA 440
           FAVVA EVK+LANQTA+AT++I+ QV  IQ  +    +AI  I   IA V++ +  I+ A
Sbjct: 555 FAVVAGEVKNLANQTARATDDIQAQVGAIQAETERAVAAIGGIATTIATVNDYTMGIASA 614

Query: 441 AEEQAAATR--------------EVSQNINGVEQAAAQTGRSSTELLSVAQSMSHQADDL 486
            EEQ AAT+              EVSQ+I  V  AA QTG ++ +L  +A  +S ++D L
Sbjct: 615 VEEQGAATQEIARNVQQAAAGTSEVSQSIGKVLDAARQTGVAAQQLSGLADGLSGESDRL 674

Query: 487 ETRVDAFLRKVRS 499
              V  F+ +VR+
Sbjct: 675 RGNVGGFIAEVRA 687



 Score = 36.6 bits (83), Expect = 3e-06
 Identities = 38/198 (19%), Positives = 76/198 (38%), Gaps = 16/198 (8%)

Query: 269 VASSAGKMQNTAQAMAAAAEQTSQQSSIVSTAAEELGTSVSEIARQIAQATRVTDDAVAE 328
           +   AG  ++ +   A   ++    ++ +    +    + S  AR+  +A R+ D     
Sbjct: 352 IGDFAGGSRDFSVPHAGRTDEIGAMATAIQVLRDNAREADSRAARE-EEAARLRDQ---H 407

Query: 329 TKASEKLVGELVTAADKI-GAVSQLIADIASQTNLLALNATIEAARAGDAGKGFAVVASE 387
            +  E +    V + D + G V+  +  + + T  L+  AT    ++        VVAS 
Sbjct: 408 RQRVEAVTTTFVDSIDSVVGGVATAVNGLRASTETLSQTATTTTEQS-------TVVASA 460

Query: 388 VKSLANQTAKATEEIEQQVSGIQDSSRATASAIRQIGLVIAQVSEISASISGAAEEQAAA 447
            +  +          E+    IQ+ SR  A         + +    +A++ G AE    A
Sbjct: 461 AEEASTNVQTVAAAAEELSHSIQEISRRVAETATATDGAVREAEATNATVRGLAE----A 516

Query: 448 TREVSQNINGVEQAAAQT 465
            R +   +N +   A+QT
Sbjct: 517 ARRIGDVVNMITDIASQT 534



 Score = 28.9 bits (63), Expect = 6e-04
 Identities = 38/182 (20%), Positives = 67/182 (36%), Gaps = 19/182 (10%)

Query: 311 IARQIAQATRVTDDAVAETKASEKLVGELVTAADKIGAVS---QLIADIASQTNLLALNA 367
           +   +A+ TRV  D       S           D+IGA++   Q++ D A + +  A   
Sbjct: 341 VVAPLAELTRVIGDFAG---GSRDFSVPHAGRTDEIGAMATAIQVLRDNAREADSRAARE 397

Query: 368 TIEAARAGDAGK------------GFAVVASEVKSLANQTAKATEEIEQQVSGIQDSSRA 415
             EAAR  D  +                V   V +  N    +TE + Q  +   + S  
Sbjct: 398 E-EAARLRDQHRQRVEAVTTTFVDSIDSVVGGVATAVNGLRASTETLSQTATTTTEQSTV 456

Query: 416 TASAIRQIGLVIAQVSEISASISGAAEEQAAATREVSQNINGVEQAAAQTGRSSTELLSV 475
            ASA  +    +  V+  +  +S + +E +    E +   +G  + A  T  +   L   
Sbjct: 457 VASAAEEASTNVQTVAAAAEELSHSIQEISRRVAETATATDGAVREAEATNATVRGLAEA 516

Query: 476 AQ 477
           A+
Sbjct: 517 AR 518