Pairwise Alignments

Query, 500 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 698 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  199 bits (506), Expect = 3e-55
 Identities = 123/281 (43%), Positives = 170/281 (60%), Gaps = 28/281 (9%)

Query: 247 RKEENAALAKQFETGVKATVETVASSAGKMQNTAQAMAAAAEQTSQQSSIVSTAA----- 301
           RK     LA  FE  V   ++TV S+A ++Q ++  MA+ A +TS Q++ V++A+     
Sbjct: 279 RKAAMRQLANTFEGSVGKVIQTVTSAATQLQVSSTQMASTAAETSAQATTVASASQQASA 338

Query: 302 ---------EELGTSVSEIARQIAQATRVTDDAVAETKASEKLVGELVTAADKIGAVSQL 352
                    EEL +S++EIA+Q+ ++  V   A  E   +   +  L   A+KIG +  L
Sbjct: 339 NVETVAAATEELSSSITEIAKQVERSQSVASRAQDEAANTNVQIRALSENANKIGEIVNL 398

Query: 353 IADIASQTNLLALNATIEAARAGDAGKGFAVVASEVKSLANQTAKATEEIEQQVSGIQDS 412
           I DIASQTNLLALNATIEAARAGDAGKGFAVVA+EVK LA QT KATEEI  Q+  +QD 
Sbjct: 399 INDIASQTNLLALNATIEAARAGDAGKGFAVVANEVKHLATQTGKATEEIASQIRAVQDG 458

Query: 413 SRATASAIRQIGLVIAQVSEISASISGAAEEQAAATREVSQNIN--------------GV 458
           +     AI  I  VI+++ EISAS++ A EEQAAAT+E+++N+                V
Sbjct: 459 TNNAVHAIDGITKVISEMGEISASVASAVEEQAAATQEIARNVEQAAAGTAEVSSSVVTV 518

Query: 459 EQAAAQTGRSSTELLSVAQSMSHQADDLETRVDAFLRKVRS 499
           EQAA  TG ++ ++ S A  +S Q++ L   V  FL +VRS
Sbjct: 519 EQAARDTGAAAEQIHSAATDLSQQSEFLRAEVGRFLDQVRS 559