Pairwise Alignments

Query, 374 a.a., DNA-directed DNA polymerase (NCBI) from Rhodospirillum rubrum S1H

Subject, 328 a.a., DNA polymerase III subunit delta' from Pseudomonas putida KT2440

 Score =  116 bits (290), Expect = 1e-30
 Identities = 82/208 (39%), Positives = 111/208 (53%), Gaps = 20/208 (9%)

Query: 39  RAAHAWLISGPRGIGKATLAFRFARFALAGGLEGGEGGLFGALAPASLAMDPAHPVFRRV 98
           R AHA+L+ GP+GIGK  +A R     L    +G +    GA     L           +
Sbjct: 20  RHAHAYLLHGPQGIGKRAMAERLMARLLCQQPQGLDA--CGACKSCLL-----------L 66

Query: 99  AAGSHGDLRVIERGLAEGTGGRRRGEIVIGDVRDLGGFMRMTPSEGGWRVVIVDGAEDMN 158
            AGSH D  V+E   A+         I +  VR+L  F+  T   GG +VV+++  E MN
Sbjct: 67  KAGSHPDNFVLEPEEADKP-------IKVDQVRELVAFVVQTAQLGGRKVVLIEPVEAMN 119

Query: 159 RNAANALLKGLEEPPGRALLLLVSHNPARLLPTIRSRCRRLALRPLEPAVLATLIERSLP 218
            NA+NALLK LEEP G  +LLLV+H P+RLLPTI+SRC+++A      A     +  +LP
Sbjct: 120 VNASNALLKSLEEPSGDTVLLLVTHQPSRLLPTIKSRCQQVACPQPSLAQSQAWLAGALP 179

Query: 219 ELAETERPGLIGLAEGSIGRAMDLAAMG 246
           +  E ER  L+ LA GS   A+ L A G
Sbjct: 180 DCDEVERDELLTLAAGSPLMAVSLQAQG 207