Pairwise Alignments

Query, 583 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 604 a.a., methyl-accepting chemotaxis protein from Agrobacterium fabrum C58

 Score =  207 bits (526), Expect = 1e-57
 Identities = 164/579 (28%), Positives = 276/579 (47%), Gaps = 59/579 (10%)

Query: 29  LRNKRVVVKISVIVAIMGLALCVTVGWLLKSQYDALLDERVTQTRVLTEAAVGVATKLQA 88
           ++N  + +++  +VA+    L   + + L   Y  +  ER      + E AV +  +   
Sbjct: 1   MKNVTISMRLYALVALFLAILAAALTFSLFESYREMERERKAGLAAMNETAVAIIKQYYQ 60

Query: 89  EVSAGRLTRDQAIETWKTALNGMTYGD-NGYLFAYAVDGINLVLPPRPDLVGKPVV---- 143
               G LTR+ A +  KT +  M YG+ +GY +   +    ++ P +P++ G  +     
Sbjct: 61  LEQGGSLTREAAQQQAKTTIAAMRYGNGSGYFWINDMHPTMVMHPIKPEMNGTDLTANKD 120

Query: 144 DRGAFLALQAAATRGPGG-GRLDYVWPRVKGGPPIPKVSWAMEIKAWGALVGTGIFVDDV 202
             G  L ++   T   GG G +DY WP+     P+ K S       WG +VGTG++VDD+
Sbjct: 121 PNGKALFVEFVNTVKAGGQGFVDYYWPKPGAPDPVEKFSHVAGFAPWGWIVGTGVYVDDL 180

Query: 203 QAIFWAKLREAMLIGGLLSAVAIVLVSL---ISRDLSAVLGDIAQRMALISGGQVDIAVP 259
           +A+FW   R+A   GGL   V +++V +   + R ++  +  I Q M  I+ G     + 
Sbjct: 181 EAVFW---RDAYFNGGLCVVVGLLVVGVAAFVVRSVTRPIDLIRQSMKRIADGDGAAEIQ 237

Query: 260 NQDRRDEAGAMARSLEVFRGKVAETEHLRGDQERLKASAEAARKASLVELAKRFEDSVNS 319
             DR DE GA+A++L V R  V E   L+  +   + + E AR  + + L    E   ++
Sbjct: 238 FADRGDEIGAIAKTLLVLRDSVNERSALQAREADQQRALEEARHGNEMVLRSASERQAHA 297

Query: 320 VA------QAVAKGARTMD--------ENARTMFGLA---------------NVTREKAS 350
           +       +A+A G  T++        E  R  F  A                V  + AS
Sbjct: 298 MERLGHALEALANGDLTVELADIGSDYEKLRVDFNRAVGALHGAIEAIARTGQVVNDSAS 357

Query: 351 DSSV----MSERTN---ANFQTVASASEQLSASIREIANQTDKARVTSQQAVETADQSA- 402
           D S     +S RT    A  +  A+A ++++A++R  + + ++AR   Q    +A +S  
Sbjct: 358 DISGATGNLSRRTEQQAAALEETAAALDEITATVRTASERANEARQMVQDTKTSAGRSGE 417

Query: 403 ------DRMAGLVSDAEKIGAVITLIEAIASQTNLLALNATIEAARAGDAGKGFAVVAHE 456
                 D M  +   +++IG +I++I+ IA QTNLLALNA +EAARAG+AG+GFAVVA E
Sbjct: 418 IVRNAVDAMGRIEDSSKRIGQIISVIDEIAFQTNLLALNAGVEAARAGEAGRGFAVVAQE 477

Query: 457 VKNLSTQTRKATEDIRGQIERVRASVSAAASDIATISHVIHDIAEAAGAISAAVEEQGAA 516
           V+ L+ ++  A ++I+  I R    V    + + +    + +I      +   V     A
Sbjct: 478 VRELAQRSANAAKEIKTLINRSAEEVGGGVALVRSTGDALDEIVALVNRVDGHVNSIATA 537

Query: 517 TKEISRSVQEVLSTSESVSH-DIRTLAEAARETETTAGA 554
            +E +  +QE+   + SV+H D  T   AA   ETTA +
Sbjct: 538 AREQATGLQEI---NTSVNHMDQMTQQNAAMVEETTAAS 573



 Score = 37.0 bits (84), Expect = 2e-06
 Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 7/139 (5%)

Query: 257 AVPNQDRRDEAGAMARSLEVFRGKVAET-EHLRGDQERLKASAEAARKASLVELAKRFED 315
           AV  Q+ R+ A   A + +  +  +  + E + G    ++++ +A  +  +V L  R + 
Sbjct: 472 AVVAQEVRELAQRSANAAKEIKTLINRSAEEVGGGVALVRSTGDALDE--IVALVNRVDG 529

Query: 316 SVNSVAQAVAKGARTMDENARTMFGLANVTREKASDSSVMSERTNANFQTVASASEQLSA 375
            VNS+A A  + A  + E   ++  +  +T++ A+    M E T A  QT+A  S+QL A
Sbjct: 530 HVNSIATAAREQATGLQEINTSVNHMDQMTQQNAA----MVEETTAASQTLAEESQQLRA 585

Query: 376 SIREIANQTDKARVTSQQA 394
            +          R  S+ A
Sbjct: 586 LLSRFELGQGAGRAVSRAA 604